comp_bio

Intel Core i7-8750H testing with a GIGABYTE AERO 15-X9 and Gigabyte NVIDIA GeForce RTX 2070 with Max-Q Design 8192MB on Ubuntu 18.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1908309-KH-COMPBIO4590
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Result
Identifier
Performance Per
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Date
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  Test
  Duration
comp_bio
August 30 2019
 
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comp_bio

Processor: Intel Core i7-8750H @ 4.10GHz (12 Cores), Motherboard: GIGABYTE AERO 15-X9, Chipset: Intel Cannon Lake PCH Shared SRAM, Memory: 32768MB, Disk: 469GB, Graphics: Gigabyte NVIDIA GeForce RTX 2070 with Max-Q Design 8192MB (885/6000MHz), Audio: Realtek ALC255, Network: Qualcomm Atheros Killer E2500 Gigabit + Intel Wireless-AC 9560

OS: Ubuntu 18.04, Kernel: 5.0.0-25-generic (x86_64), Desktop: GNOME Shell 3.28.4, Display Driver: NVIDIA 418.87.00, OpenGL: 4.6.0, Compiler: CUDA 10.0, File-System: ext4, Screen Resolution: 1920x1080

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: intel_pstate powersave

comp_bioOpenBenchmarking.orgPhoronix Test SuiteIntel Core i7-8750H @ 4.10GHz (12 Cores)GIGABYTE AERO 15-X9Intel Cannon Lake PCH Shared SRAM32768MB469GBGigabyte NVIDIA GeForce RTX 2070 with Max-Q Design 8192MB (885/6000MHz)Realtek ALC255Qualcomm Atheros Killer E2500 Gigabit + Intel Wireless-AC 9560Ubuntu 18.045.0.0-25-generic (x86_64)GNOME Shell 3.28.4NVIDIA 418.87.004.6.0CUDA 10.0ext41920x1080ProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelDesktopDisplay DriverOpenGLCompilerFile-SystemScreen ResolutionComp_bio BenchmarksSystem Logs- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic --without-cuda-driver -v - Scaling Governor: intel_pstate powersave

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchcomp_bio246810SE +/- 0.01, N = 36.191. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

This test performs an alignment of 100 pyruvate decarboxylase sequences. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.392Multiple Sequence Alignmentcomp_bio0.7831.5662.3493.1323.915SE +/- 0.09, N = 63.481. (CC) gcc options: -std=c99 -O3 -lm -lpthread

Timed MrBayes Analysis

This test performs a bayesian analysis of a set of primate genome sequences in order to estimate their phylogeny. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny Analysiscomp_bio50100150200250SE +/- 14.85, N = 6225.751. (CC) gcc options: -O3 -msse -mfpmath=sse -march=native -lm -pthread -lmpi

comp_bio

Processor: Intel Core i7-8750H @ 4.10GHz (12 Cores), Motherboard: GIGABYTE AERO 15-X9, Chipset: Intel Cannon Lake PCH Shared SRAM, Memory: 32768MB, Disk: 469GB, Graphics: Gigabyte NVIDIA GeForce RTX 2070 with Max-Q Design 8192MB (885/6000MHz), Audio: Realtek ALC255, Network: Qualcomm Atheros Killer E2500 Gigabit + Intel Wireless-AC 9560

OS: Ubuntu 18.04, Kernel: 5.0.0-25-generic (x86_64), Desktop: GNOME Shell 3.28.4, Display Driver: NVIDIA 418.87.00, OpenGL: 4.6.0, Compiler: CUDA 10.0, File-System: ext4, Screen Resolution: 1920x1080

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: intel_pstate powersave

Testing initiated at 30 August 2019 14:22 by user brielin.