USU-cluster-hmmer-2

2 x AMD EPYC 7601 32-Core testing with a ASUS KNPP-D32 (0705 BIOS) and ASPEED Family on CentOS 7.6.1810 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1903227-SP-USUCLUSTE78
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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
USU-cluster-hmmer-002
March 22 2019
  2 Minutes


USU-cluster-hmmer-2OpenBenchmarking.orgPhoronix Test Suite2 x AMD EPYC 7601 32-Core @ 2.20GHz (64 Cores)ASUS KNPP-D32 (0705 BIOS)AMD Family 17h516096MB2 x 480GB INTEL SSDSC2KB48ASPEED FamilySmart Cable2 x Intel I350 + Mellanox MT27500 FamilyCentOS 7.6.18103.10.0-862.9.1.el7.x86_64 (x86_64)X Server 1.19.5modesetting 1.19.5GCC 4.8.5 20150623fhgfsProcessorMotherboardChipsetMemoryDiskGraphicsMonitorNetworkOSKernelDisplay ServerDisplay DriverCompilerFile-SystemUSU-cluster-hmmer-2 BenchmarksSystem Logs- SRUN_DEBUG=3- --build=x86_64-redhat-linux --disable-libgcj --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-indirect-function --enable-gnu-unique-object --enable-initfini-array --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=x86-64 --with-linker-hash-style=gnu --with-tune=generic - Scaling Governor: acpi-cpufreq conservative

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database SearchUSU-cluster-hmmer-0023691215SE +/- 0.83, N = 99.611. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm