cantley-node01-namd

2 x Intel Xeon Gold 6148 testing with a Dell 013M88 (1.2.6 BIOS) and Matrox G200eW3 16GB on CentOS Linux 7 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1901284-SK-CANTLEYNO29
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Result
Identifier
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Performance Per
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Date
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  Test
  Duration
v100_namd
January 28 2019
  3 Minutes

v100_namd

Processor: 2 x Intel Xeon Gold 6148 (40 Cores / 80 Threads), Motherboard: Dell 013M88 (1.2.6 BIOS), Chipset: Intel Sky Lake-E DMI3 Registers, Memory: 12 x 16384 MB DDR4-2666MHz M393A2K43BB1-CTD, Disk: 240GB DELLBOSS VD + 1600GB Dell Flash PM1725a 1.6TB AIC, Graphics: Matrox G200eW3 16GB, Network: Intel I350 Gigabit Connection

OS: CentOS Linux 7, Kernel: 3.10.0-862.9.1.el7.x86_64 (x86_64), Compiler: GCC 4.8.5 20150623 + CUDA 9.1, File-System: xfs, Screen Resolution: 1024x768

Security Notes: KPTI + Load fences + IBRS (kernel)

cantley-node01-namdOpenBenchmarking.orgPhoronix Test Suite2 x Intel Xeon Gold 6148 (40 Cores / 80 Threads)Dell 013M88 (1.2.6 BIOS)Intel Sky Lake-E DMI3 Registers12 x 16384 MB DDR4-2666MHz M393A2K43BB1-CTD240GB DELLBOSS VD + 1600GB Dell Flash PM1725a 1.6TB AICMatrox G200eW3 16GBIntel I350 Gigabit ConnectionCentOS Linux 73.10.0-862.9.1.el7.x86_64 (x86_64)GCC 4.8.5 20150623 + CUDA 9.1xfs1024x768ProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelCompilerFile-SystemScreen ResolutionCantley-node01-namd BenchmarksSystem Logs- KPTI + Load fences + IBRS (kernel)

NAMD CUDA

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. This version of the NAMD test profile uses CUDA GPU acceleration. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD CUDA 2.13ATPase Simulation - 327,506 Atomsv100_namd0.01760.03520.05280.07040.088SE +/- 0.00115, N = 50.07837

v100_namd

Processor: 2 x Intel Xeon Gold 6148 (40 Cores / 80 Threads), Motherboard: Dell 013M88 (1.2.6 BIOS), Chipset: Intel Sky Lake-E DMI3 Registers, Memory: 12 x 16384 MB DDR4-2666MHz M393A2K43BB1-CTD, Disk: 240GB DELLBOSS VD + 1600GB Dell Flash PM1725a 1.6TB AIC, Graphics: Matrox G200eW3 16GB, Network: Intel I350 Gigabit Connection

OS: CentOS Linux 7, Kernel: 3.10.0-862.9.1.el7.x86_64 (x86_64), Compiler: GCC 4.8.5 20150623 + CUDA 9.1, File-System: xfs, Screen Resolution: 1024x768

Security Notes: KPTI + Load fences + IBRS (kernel)

Testing initiated at 28 January 2019 22:15 by user .