ncgr-composite

4 x Intel Xeon E7-8860 v3 testing with a HP ProLiant DL580 Gen9 (U17 BIOS) and Matrox MGA G200EH on CentOS Linux 7 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1810041-RA-1809265RA96
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Bioinformatics 2 Tests
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gentoo
September 26 2018
  50 Minutes
CentOS-newBIOS
October 02 2018
  5 Minutes
CentOS7-newBIOS
October 02 2018
  2 Hours, 7 Minutes
CentOS7-newBIOS-balanced_power
October 03 2018
  2 Hours, 59 Minutes
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October 04 2018
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ncgr-compositeProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen ResolutiongentooCentOS-newBIOSCentOS7-newBIOSCentOS7-newBIOS-balanced_powerprefetches_offIntel Core i7-6700K @ 4.20GHz (4 Cores / 8 Threads)ASRock Z170 Extreme7+ (P7.30 BIOS)Intel Xeon E3-1200 v5/E3-150064512MB512GB Samsung SSD 840 + 3 x Samsung SSD 950 PRO 512GBeVGA NVIDIA GeForce GTX 950 2048MB (1151/3304MHz)Realtek ALC1150ASUS PB287QIntel ConnectionGentoo/Linux4.18.10-gentoo (x86_64)KDE Plasma 5.13.4X Server 1.20.1NVIDIA 410.574.5.0GCC 8.2.0 + Clang 6.0.1 + LLVM 6.0.1 + CUDA 9.2ext42560x16004 x Intel Xeon E7-8860 v3 @ 2.19GHz (64 Cores / 128 Threads)HP ProLiant DL580 Gen9 (U17 BIOS)Intel Xeon E7 v3/Xeon1096704MB300GB LOGICAL VOLUME + 24005GB LOGICAL VOLUME + 800GB LOGICAL VOLUMEMatrox MGA G200EHIntel 82599ES 10-Gigabit SFI/SFP+CentOS Linux 73.10.0-862.14.4.el7.x86_64 (x86_64)GCC 4.8.5 20150623xfs1024x768OpenBenchmarking.orgCompiler Details- gentoo: --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/8.2.0 --build=x86_64-pc-linux-gnu --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/8.2.0 --disable-altivec --disable-esp --disable-fixed-point --disable-libmpx --disable-libmudflap --disable-libssp --disable-systemtap --disable-werror --enable-__cxa_atexit --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-default-ssp --enable-languages=c,c++,fortran --enable-libgomp --enable-libsanitizer --enable-libstdcxx-time --enable-libvtv --enable-lto --enable-multilib --enable-nls --enable-obsolete --enable-secureplt --enable-shared --enable-targets=all --enable-threads=posix --enable-vtable-verify --host=x86_64-pc-linux-gnu --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/8.2.0/include --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/8.2.0/man --with-multilib-list=m32,m64 --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/8.2.0/python --without-isl - CentOS-newBIOS: --build=x86_64-redhat-linux --disable-libgcj --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-indirect-function --enable-gnu-unique-object --enable-initfini-array --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=x86-64 --with-linker-hash-style=gnu --with-tune=generic - CentOS7-newBIOS: --build=x86_64-redhat-linux --disable-libgcj --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-indirect-function --enable-gnu-unique-object --enable-initfini-array --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=x86-64 --with-linker-hash-style=gnu --with-tune=generic - CentOS7-newBIOS-balanced_power: --build=x86_64-redhat-linux --disable-libgcj --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-indirect-function --enable-gnu-unique-object --enable-initfini-array --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=x86-64 --with-linker-hash-style=gnu --with-tune=generic - prefetches_off: --build=x86_64-redhat-linux --disable-libgcj --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-indirect-function --enable-gnu-unique-object --enable-initfini-array --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=x86-64 --with-linker-hash-style=gnu --with-tune=generic Processor Details- gentoo: Scaling Governor: intel_pstate performanceJava Details- gentoo: Java SE Runtime Environment (build 1.8.0_181-b13)Python Details- gentoo: Python 2.7.15 + Python 3.6.6- CentOS-newBIOS: Python 2.7.5 + Python 3.6.5- CentOS7-newBIOS: Python 2.7.5 + Python 3.6.5- CentOS7-newBIOS-balanced_power: Python 2.7.5 + Python 3.6.5- prefetches_off: Python 2.7.5 + Python 3.6.5Security Details- gentoo: KPTI + __user pointer sanitization + Full generic retpoline IBPB IBRS_FW + SSB disabled via prctl and seccomp + PTE Inversion; VMX: conditional cache flushes SMT vulnerable- CentOS-newBIOS: SELinux- CentOS7-newBIOS: SELinux- CentOS7-newBIOS-balanced_power: SELinux- prefetches_off: SELinux

gentooCentOS-newBIOSCentOS7-newBIOSCentOS7-newBIOS-balanced_powerprefetches_offResult OverviewPhoronix Test Suite100%145%190%235%280%Timed HMMer SearchTimed MAFFT AlignmentGo BenchmarksJava SciMarkP.D.SM.S.AgarbageMonte Carlo

ncgr-compositehmmer: Pfam Database Searchmafft: Multiple Sequence Alignmentgo-benchmark: garbagejava-scimark2: Monte Carlonumpy: pgbench: Buffer Test - Single Thread - Read Writepybench: Total For Average Test Timesapache: Static Web Page ServinggentooCentOS-newBIOSCentOS7-newBIOSCentOS7-newBIOS-balanced_powerprefetches_off6.623.462243994107950459614431370284727.794.7316043267267.804.571590539725152430742137997618.507.15316460272615258402753213999108.894.711563509726151372511314214210333OpenBenchmarking.org

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database SearchgentooCentOS-newBIOSCentOS7-newBIOSCentOS7-newBIOS-balanced_powerprefetches_off510152025SE +/- 0.04, N = 3SE +/- 0.14, N = 12SE +/- 0.15, N = 12SE +/- 0.37, N = 12SE +/- 0.16, N = 126.627.797.8018.508.891. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database SearchgentooCentOS-newBIOSCentOS7-newBIOSCentOS7-newBIOS-balanced_powerprefetches_off510152025Min: 6.57 / Avg: 6.62 / Max: 6.69Min: 7.56 / Avg: 7.79 / Max: 9.31Min: 7.58 / Avg: 7.8 / Max: 9.42Min: 18 / Avg: 18.5 / Max: 22.59Min: 8.65 / Avg: 8.89 / Max: 10.681. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

This test performs an alignment of 100 pyruvate decarboxylase sequences. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.392Multiple Sequence AlignmentgentooCentOS-newBIOSCentOS7-newBIOSCentOS7-newBIOS-balanced_powerprefetches_off246810SE +/- 0.07, N = 12SE +/- 0.06, N = 12SE +/- 0.11, N = 9SE +/- 0.13, N = 12SE +/- 0.06, N = 123.464.734.577.154.711. (CC) gcc options: -std=c99 -O3 -lm -lpthread
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.392Multiple Sequence AlignmentgentooCentOS-newBIOSCentOS7-newBIOSCentOS7-newBIOS-balanced_powerprefetches_off3691215Min: 3.15 / Avg: 3.46 / Max: 3.83Min: 4.42 / Avg: 4.73 / Max: 4.97Min: 4.26 / Avg: 4.57 / Max: 5.36Min: 6.69 / Avg: 7.15 / Max: 8.42Min: 4.41 / Avg: 4.71 / Max: 5.131. (CC) gcc options: -std=c99 -O3 -lm -lpthread

Go Benchmarks

Benchmark for monitoring real time performance of the Go implementation for HTTP, JSON and garbage testing per iteration. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNanoseconds/Operation, Fewer Is BetterGo BenchmarksTest: garbagegentooCentOS-newBIOSCentOS7-newBIOSCentOS7-newBIOS-balanced_powerprefetches_off700K1400K2100K2800K3500KSE +/- 16215.21, N = 3SE +/- 11518.72, N = 3SE +/- 21082.83, N = 3SE +/- 82044.91, N = 9SE +/- 14246.51, N = 322439941604326159053931646021563509
OpenBenchmarking.orgNanoseconds/Operation, Fewer Is BetterGo BenchmarksTest: garbagegentooCentOS-newBIOSCentOS7-newBIOSCentOS7-newBIOS-balanced_powerprefetches_off500K1000K1500K2000K2500KMin: 2211682 / Avg: 2243994 / Max: 2262548Min: 1581303 / Avg: 1604326 / Max: 1616544Min: 1567597 / Avg: 1590538.67 / Max: 1632648Min: 2825759 / Avg: 3164602.11 / Max: 3552641Min: 1538298 / Avg: 1563509.33 / Max: 1587612

Java SciMark

This test runs the Java version of SciMark 2.0, which is a benchmark for scientific and numerical computing developed by programmers at the National Institute of Standards and Technology. This benchmark is made up of Fast Foruier Transform, Jacobi Successive Over-relaxation, Monte Carlo, Sparse Matrix Multiply, and dense LU matrix factorization benchmarks. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMflops, More Is BetterJava SciMark 2.0Computational Test: Monte CarlogentooCentOS-newBIOSCentOS7-newBIOSCentOS7-newBIOS-balanced_powerprefetches_off2004006008001000SE +/- 1.00, N = 4SE +/- 0.10, N = 4SE +/- 0.32, N = 4SE +/- 0.43, N = 4SE +/- 0.14, N = 41079726725726726
OpenBenchmarking.orgMflops, More Is BetterJava SciMark 2.0Computational Test: Monte CarlogentooCentOS-newBIOSCentOS7-newBIOSCentOS7-newBIOS-balanced_powerprefetches_off2004006008001000Min: 1076.7 / Avg: 1079.41 / Max: 1081.04Min: 725.75 / Avg: 725.99 / Max: 726.24Min: 724.28 / Avg: 725.01 / Max: 725.75Min: 725.26 / Avg: 726.3 / Max: 727.22Min: 725.99 / Avg: 726.24 / Max: 726.48

Numpy Benchmark

This is a test to obtain the general Numpy performance. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNanoseconds, Fewer Is BetterNumpy BenchmarkgentooCentOS7-newBIOSCentOS7-newBIOS-balanced_powerprefetches_off3M6M9M12M15M5045961152430741525840215137251

PostgreSQL pgbench

This is a simple benchmark of PostgreSQL using pgbench. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgTPS, More Is BetterPostgreSQL pgbench 10.3Scaling: Buffer Test - Test: Single Thread - Mode: Read WritegentooCentOS7-newBIOS-balanced_powerprefetches_off30060090012001500SE +/- 1.36, N = 3SE +/- 10.71, N = 3SE +/- 33.86, N = 944375313141. (CC) gcc options: -fno-strict-aliasing -fwrapv -O2 -lpgcommon -lpgport -lpq -lpthread -lrt -lcrypt -ldl -lm
OpenBenchmarking.orgTPS, More Is BetterPostgreSQL pgbench 10.3Scaling: Buffer Test - Test: Single Thread - Mode: Read WritegentooCentOS7-newBIOS-balanced_powerprefetches_off2004006008001000Min: 440.85 / Avg: 442.8 / Max: 445.42Min: 735.71 / Avg: 753.16 / Max: 772.63Min: 1190.56 / Avg: 1313.89 / Max: 1465.851. (CC) gcc options: -fno-strict-aliasing -fwrapv -O2 -lpgcommon -lpgport -lpq -lpthread -lrt -lcrypt -ldl -lm

PyBench

This test profile reports the total time of the different average timed test results from PyBench. PyBench reports average test times for different functions such as BuiltinFunctionCalls and NestedForLoops, with this total result providing a rough estimate as to Python's average performance on a given system. This test profile runs PyBench each time for 20 rounds. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMilliseconds, Fewer Is BetterPyBench 2018-02-16Total For Average Test TimesgentooCentOS7-newBIOSCentOS7-newBIOS-balanced_powerprefetches_off5001000150020002500SE +/- 0.67, N = 3SE +/- 2.60, N = 3SE +/- 3.76, N = 3SE +/- 7.31, N = 31370213721392142
OpenBenchmarking.orgMilliseconds, Fewer Is BetterPyBench 2018-02-16Total For Average Test TimesgentooCentOS7-newBIOSCentOS7-newBIOS-balanced_powerprefetches_off400800120016002000Min: 1369 / Avg: 1370.33 / Max: 1371Min: 2133 / Avg: 2137.33 / Max: 2142Min: 2133 / Avg: 2139.33 / Max: 2146Min: 2132 / Avg: 2141.67 / Max: 2156

Apache Benchmark

This is a test of ab, which is the Apache benchmark program. This test profile measures how many requests per second a given system can sustain when carrying out 1,000,000 requests with 100 requests being carried out concurrently. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgRequests Per Second, More Is BetterApache Benchmark 2.4.29Static Web Page ServinggentooCentOS7-newBIOSCentOS7-newBIOS-balanced_powerprefetches_off6K12K18K24K30KSE +/- 127.28, N = 3SE +/- 23.97, N = 3SE +/- 164.71, N = 4SE +/- 201.86, N = 32847299769910103331. (CC) gcc options: -shared -fPIC -O2 -pthread
OpenBenchmarking.orgRequests Per Second, More Is BetterApache Benchmark 2.4.29Static Web Page ServinggentooCentOS7-newBIOSCentOS7-newBIOS-balanced_powerprefetches_off5K10K15K20K25KMin: 28273.78 / Avg: 28472.41 / Max: 28709.6Min: 9939.72 / Avg: 9975.75 / Max: 10021.14Min: 9653.67 / Avg: 9910.17 / Max: 10389.44Min: 10055.9 / Avg: 10333.45 / Max: 10726.131. (CC) gcc options: -shared -fPIC -O2 -pthread