computational-biology-20170929082914

20170929082914

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Identifier
Performance Per
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Date
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  Duration
20170929082914
September 29 2017
 
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computational-biology-20170929082914OpenBenchmarking.orgPhoronix Test Suite2 x Intel Core (Broadwell) @ 2.10GHz (2 Cores)OpenStack Foundation Nova v13.1.28192MB25GBEFI VGAUbuntu 16.04.3 LTS4.4.0-92-generic (x86_64)GCC 5.4.0 20160609aufs800x600dockerProcessorMotherboardMemoryDiskGraphicsOSKernelCompilerFile-SystemScreen ResolutionSystem LayerComputational-biology-20170929082914 BenchmarksSystem Logs- --build=x86_64-linux-gnu --disable-browser-plugin --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-default-libstdcxx-abi=new --with-multilib-list=m32,m64,mx32 --with-tune=generic -v

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Search20170929082914612182430SE +/- 0.29, N = 1027.581. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignment201709290829143691215SE +/- 0.11, N = 2010.001. (CC) gcc options: -O3 -lm -lpthread

Timed MrBayes Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny Analysis20170929082914160320480640800SE +/- 9.56, N = 20741.11