ubuntu-64gb-20c_digitalocean_computational-biology

Computational Biology Suite on Digital Ocean Ubuntu 20-core 64GB RAM 640GB SSD

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1603141-GA-UBUNTU64G20
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Intel Xeon E5-2650L v3
March 14 2016
 
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Intel Xeon E5-2650L v3

Processor: 20 x Intel Xeon E5-2650L v3 @ 1.80GHz (20 Cores), Motherboard: Bochs, Chipset: Intel 440FX- 82441FX PMC, Memory: 64512MB, Disk: 630GB, Graphics: Cirrus Logic GD 5446, Network: Red Hat Virtio device

OS: Ubuntu 15.10, Kernel: 4.2.0-34-generic (x86_64), Compiler: GCC 5.2.1 20151010, File-System: ext4, Screen Resolution: 1024x768, System Layer: KVM

Compiler Notes: --build=x86_64-linux-gnu --disable-browser-plugin --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-default-libstdcxx-abi=new --with-multilib-list=m32,m64,mx32 --with-tune=generic -v

ubuntu-64gb-20c_digitalocean_computational-biologyOpenBenchmarking.orgPhoronix Test Suite20 x Intel Xeon E5-2650L v3 @ 1.80GHz (20 Cores)BochsIntel 440FX- 82441FX PMC64512MB630GBCirrus Logic GD 5446Red Hat Virtio deviceUbuntu 15.104.2.0-34-generic (x86_64)GCC 5.2.1 20151010ext41024x768KVMProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelCompilerFile-SystemScreen ResolutionSystem LayerUbuntu-64gb-20c_digitalocean_computational-biology BenchmarksSystem Logs- --build=x86_64-linux-gnu --disable-browser-plugin --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-default-libstdcxx-abi=new --with-multilib-list=m32,m64,mx32 --with-tune=generic -v

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database SearchIntel Xeon E5-2650L v33691215SE +/- 0.08, N = 312.961. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence AlignmentIntel Xeon E5-2650L v31.23752.4753.71254.956.1875SE +/- 0.18, N = 65.501. (CC) gcc options: -O3 -lm -lpthread

Intel Xeon E5-2650L v3

Processor: 20 x Intel Xeon E5-2650L v3 @ 1.80GHz (20 Cores), Motherboard: Bochs, Chipset: Intel 440FX- 82441FX PMC, Memory: 64512MB, Disk: 630GB, Graphics: Cirrus Logic GD 5446, Network: Red Hat Virtio device

OS: Ubuntu 15.10, Kernel: 4.2.0-34-generic (x86_64), Compiler: GCC 5.2.1 20151010, File-System: ext4, Screen Resolution: 1024x768, System Layer: KVM

Compiler Notes: --build=x86_64-linux-gnu --disable-browser-plugin --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-default-libstdcxx-abi=new --with-multilib-list=m32,m64,mx32 --with-tune=generic -v

Testing initiated at 14 March 2016 17:28 by user dave.