phoronix

2 x Intel Xeon E5520 testing with a Supermicro X8DT3 v2.0 and Matrox s MGA G200eW WPCM450 on CentOS 6.7 via the Phoronix Test Suite.

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Bioinformatics 3 Tests
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April 29 2012
 
EX5T
January 05 2016
 
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phoronixProcessorMotherboardMemoryDiskGraphicsAudioMonitorChipsetNetworkOSKernelDesktopDisplay ServerOpenGLCompilerFile-SystemScreen ResolutiontestEX5TAMD Phenom II X4 945 @ 3.00GHz (4 Cores)Gigabyte GA-MA78GM-S2H6144MB160GB Seagate ST3160215ASGallium 0.4 on AMD RS780 512MBRealtek ALC889APLE2607WSCalculate Linux Desktop 11.15 GNOME3.3.3-calculate (x86_64)GNOME Shell 3.2.2.1X Server 1.11.22.1 Mesa 7.11.2 Gallium 0.4GCC 4.5.3 + LLVM 2.9ext41920x12002 x Intel Xeon E5520 @ 2.27GHz (16 Cores)Supermicro X8DT3 v2.0Intel 5520 I/O + ICH10R4 x 4096 MB DDR3-1066MHz Hyundai19993GB MR9260-4i + 4GB USB DISKMatrox s MGA G200eW WPCM450Intel 82576 Gigabit ConnectionCentOS 6.72.6.32-504.30.3.el6.exagrid24.4.0.x86_64 (x86_64)GCC 4.4.7 20120313ext3OpenBenchmarking.orgCompiler Details- EX5T: --build=x86_64-redhat-linux --disable-dssi --disable-libjava-multilib --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-unique-object --enable-java-awt=gtk --enable-java-maintainer-mode --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-libgcj-multifile --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=i686 --with-cloog --with-ppl --with-tune=generic System Details- EX5T: SELinux: Enabled.

test vs. EX5T ComparisonPhoronix Test SuiteBaseline+39.3%+39.3%+78.6%+78.6%+117.9%+117.9%+157.2%+157.2%157.3%146.8%128.9%124.2%123.3%120.9%100.2%95.6%84.3%73.5%68.7%67.8%EP.BC.S.TUA.AG.I.R.1.STotal Time2.F.CLU.ATime To CompileM.S.AP.P.SBlowfishP.D.SR.4.b.P63.1%C.E.C29.4%Elapsed Time17%IS.C6.1%NAS Parallel Benchmarks7-Zip CompressionNAS Parallel BenchmarksSmallptC-RayParallel BZIP2 CompressionNAS Parallel BenchmarksTimed PHP CompilationTimed MAFFT AlignmentHimeno BenchmarkJohn The RipperTimed HMMer SearchOpenSSLGcrypt LibraryCraftyNAS Parallel BenchmarkstestEX5T

phoronixcompress-7zip: Compress Speed Testcompress-pbzip2: 256MB File Compressionx264: H.264 Video Encodingopenssl: RSA 4096-bit Performancegcrypt: CAMELLIA256-ECB Cipherjohn-the-ripper: Blowfishgraphics-magick: Local Adaptive Thresholdinggraphics-magick: Resizinghimeno: Poisson Pressure Solverc-ray: Total Timesmallpt: Global Illumination Renderer; 100 Samplescrafty: Elapsed Timehmmer: Pfam Database Searchmafft: Multiple Sequence Alignmentminion: Quasigroupminion: Solitairenpb: EP.Bnpb: IS.Cnpb: LU.Anpb: UA.Abuild-php: Time To CompiletestEX5T862317.1463.2656.65320033994399508.7993.79204113.5925.1113.07233.02389.5887.6468.994446.4418.3854.52212837.7634.7341405734882.7442.0091132.8914.967.09225.4665.018902.2742.0727.88OpenBenchmarking.org

7-Zip Compression

OpenBenchmarking.orgMIPS, More Is Better7-Zip Compression 9.20.1Compress Speed TesttestEX5T5K10K15K20K25KSE +/- 14.98, N = 3SE +/- 389.53, N = 68623212831. (CXX) g++ options: -pipe -lpthread
OpenBenchmarking.orgMIPS, More Is Better7-Zip Compression 9.20.1Compress Speed TesttestEX5T4K8K12K16K20KMin: 8594 / Avg: 8623 / Max: 8644Min: 19573 / Avg: 21282.5 / Max: 223181. (CXX) g++ options: -pipe -lpthread

Parallel BZIP2 Compression

OpenBenchmarking.orgSeconds, Fewer Is BetterParallel BZIP2 Compression 1.0.5256MB File CompressiontestEX5T48121620SE +/- 0.02, N = 3SE +/- 0.31, N = 617.147.761. (CXX) g++ options: -O2 -pthread -lpthread -lbz2
OpenBenchmarking.orgSeconds, Fewer Is BetterParallel BZIP2 Compression 1.0.5256MB File CompressiontestEX5T48121620Min: 17.1 / Avg: 17.14 / Max: 17.17Min: 7.1 / Avg: 7.76 / Max: 9.081. (CXX) g++ options: -O2 -pthread -lpthread -lbz2

x264

OpenBenchmarking.orgFrames Per Second, More Is Betterx264 2011-12-06H.264 Video Encodingtest1428425670SE +/- 0.11, N = 363.26

OpenSSL

OpenBenchmarking.orgSigns Per Second, More Is BetterOpenSSL 1.0.0eRSA 4096-bit PerformancetestEX5T1326395265SE +/- 0.05, N = 4SE +/- 0.05, N = 456.6534.731. (CC) gcc options: -m64 -O3 -lssl -lcrypto -ldl
OpenBenchmarking.orgSigns Per Second, More Is BetterOpenSSL 1.0.0eRSA 4096-bit PerformancetestEX5T1122334455Min: 56.5 / Avg: 56.65 / Max: 56.7Min: 34.6 / Avg: 34.73 / Max: 34.81. (CC) gcc options: -m64 -O3 -lssl -lcrypto -ldl

Gcrypt Library

OpenBenchmarking.orgMicroseconds, Fewer Is BetterGcrypt Library 1.4.4CAMELLIA256-ECB CiphertestEX5T9001800270036004500SE +/- 5.77, N = 3SE +/- 5.77, N = 3320041401. (CC) gcc options: -O2 -fvisibility=hidden
OpenBenchmarking.orgMicroseconds, Fewer Is BetterGcrypt Library 1.4.4CAMELLIA256-ECB CiphertestEX5T7001400210028003500Min: 3190 / Avg: 3200 / Max: 3210Min: 4130 / Avg: 4140 / Max: 41501. (CC) gcc options: -O2 -fvisibility=hidden

John The Ripper

OpenBenchmarking.orgReal C/S, More Is BetterJohn The Ripper 1.7.9Test: BlowfishtestEX5T12002400360048006000SE +/- 2.08, N = 3SE +/- 97.08, N = 4339957341. (CC) gcc options: -fopenmp -lcrypt
OpenBenchmarking.orgReal C/S, More Is BetterJohn The Ripper 1.7.9Test: BlowfishtestEX5T10002000300040005000Min: 3396 / Avg: 3399 / Max: 3403Min: 5461 / Avg: 5733.75 / Max: 58821. (CC) gcc options: -fopenmp -lcrypt

GraphicsMagick

OpenBenchmarking.orgIterations Per Minute, More Is BetterGraphicsMagick 1.3.12Operation: Local Adaptive Thresholdingtest1020304050SE +/- 0.00, N = 3431. (CC) gcc options: -std=gnu99 -fopenmp -O2 -pthread -llcms -ltiff -lfreetype -ljasper -ljpeg -lwmflite -lXext -lSM -lICE -lX11 -lbz2 -lxml2 -lz -lm -lrt -lpthread

OpenBenchmarking.orgIterations Per Minute, More Is BetterGraphicsMagick 1.3.12Operation: Resizingtest20406080100SE +/- 0.33, N = 3991. (CC) gcc options: -std=gnu99 -fopenmp -O2 -pthread -llcms -ltiff -lfreetype -ljasper -ljpeg -lwmflite -lXext -lSM -lICE -lX11 -lbz2 -lxml2 -lz -lm -lrt -lpthread

Himeno Benchmark

The Himeno benchmark is a linear solver of pressure Poisson using a point-Jacobi method. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure SolvertestEX5T2004006008001000SE +/- 1.26, N = 3SE +/- 4.66, N = 3508.79882.741. (CC) gcc options: -O3
OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure SolvertestEX5T150300450600750Min: 506.41 / Avg: 508.79 / Max: 510.71Min: 878 / Avg: 882.74 / Max: 892.061. (CC) gcc options: -O3

C-Ray

This is a test of C-Ray, a simple raytracer designed to test the floating-point CPU performance. This test is multi-threaded (16 threads per core), will shoot 8 rays per pixel for anti-aliasing, and will generate a 1600 x 1200 image. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterC-Ray 1.1Total TimetestEX5T20406080100SE +/- 0.01, N = 3SE +/- 0.14, N = 393.7942.001. (CC) gcc options: -lm -lpthread -O3
OpenBenchmarking.orgSeconds, Fewer Is BetterC-Ray 1.1Total TimetestEX5T20406080100Min: 93.77 / Avg: 93.79 / Max: 93.81Min: 41.83 / Avg: 42 / Max: 42.281. (CC) gcc options: -lm -lpthread -O3

Smallpt

Smallpt is a C++ global illumination renderer written in less than 100 lines of code. Global illumination is done via unbiased Monte Carlo path tracing and there is multi-threading support via the OpenMP library. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterSmallpt 1.0Global Illumination Renderer; 100 SamplestestEX5T4080120160200SE +/- 0.00, N = 3SE +/- 0.33, N = 3204911. (CXX) g++ options: -fopenmp
OpenBenchmarking.orgSeconds, Fewer Is BetterSmallpt 1.0Global Illumination Renderer; 100 SamplestestEX5T4080120160200Min: 204 / Avg: 204 / Max: 204Min: 91 / Avg: 91.33 / Max: 921. (CXX) g++ options: -fopenmp

Crafty

OpenBenchmarking.orgSeconds, Fewer Is BetterCrafty 23.4Elapsed TimetestEX5T306090120150SE +/- 0.23, N = 3SE +/- 0.53, N = 3113.59132.891. (CC) gcc options: -lstdc++ -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterCrafty 23.4Elapsed TimetestEX5T20406080100Min: 113.3 / Avg: 113.59 / Max: 114.05Min: 132.3 / Avg: 132.89 / Max: 133.951. (CC) gcc options: -lstdc++ -lm

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database SearchtestEX5T612182430SE +/- 0.15, N = 3SE +/- 0.03, N = 325.1114.961. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database SearchtestEX5T612182430Min: 24.81 / Avg: 25.11 / Max: 25.27Min: 14.91 / Avg: 14.96 / Max: 151. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence AlignmenttestEX5T3691215SE +/- 0.00, N = 3SE +/- 0.18, N = 613.077.091. (CC) gcc options: -O3 -lm -lpthread
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence AlignmenttestEX5T48121620Min: 13.07 / Avg: 13.07 / Max: 13.07Min: 6.44 / Avg: 7.09 / Max: 7.671. (CC) gcc options: -O3 -lm -lpthread

Minion

OpenBenchmarking.orgSeconds, Fewer Is BetterMinion 0.12Benchmark: Quasigrouptest50100150200250SE +/- 1.68, N = 3233.021. (CXX) g++ options: -O3 -fomit-frame-pointer -rdynamic -lboost_iostreams-mt -lz -lbz2

OpenBenchmarking.orgSeconds, Fewer Is BetterMinion 0.12Benchmark: Solitairetest80160240320400SE +/- 56.11, N = 6389.581. (CXX) g++ options: -O3 -fomit-frame-pointer -rdynamic -lboost_iostreams-mt -lz -lbz2

NAS Parallel Benchmarks

OpenBenchmarking.orgTotal Mop/s, More Is BetterNAS Parallel Benchmarks 3.3Test / Class: EP.BtestEX5T50100150200250SE +/- 0.38, N = 3SE +/- 3.57, N = 687.64225.461. (F9X) gfortran options: -fopenmp
OpenBenchmarking.orgTotal Mop/s, More Is BetterNAS Parallel Benchmarks 3.3Test / Class: EP.BtestEX5T4080120160200Min: 87.01 / Avg: 87.64 / Max: 88.33Min: 216.63 / Avg: 225.46 / Max: 234.621. (F9X) gfortran options: -fopenmp

OpenBenchmarking.orgTotal Mop/s, More Is BetterNAS Parallel Benchmarks 3.3Test / Class: IS.CtestEX5T1530456075SE +/- 0.98, N = 6SE +/- 3.03, N = 668.9965.011. (F9X) gfortran options: -fopenmp
OpenBenchmarking.orgTotal Mop/s, More Is BetterNAS Parallel Benchmarks 3.3Test / Class: IS.CtestEX5T1326395265Min: 67.4 / Avg: 68.99 / Max: 72.1Min: 58.96 / Avg: 65.01 / Max: 75.361. (F9X) gfortran options: -fopenmp

OpenBenchmarking.orgTotal Mop/s, More Is BetterNAS Parallel Benchmarks 3.3Test / Class: LU.AtestEX5T2K4K6K8K10KSE +/- 16.48, N = 3SE +/- 962.14, N = 64446.448902.271. (F9X) gfortran options: -fopenmp
OpenBenchmarking.orgTotal Mop/s, More Is BetterNAS Parallel Benchmarks 3.3Test / Class: LU.AtestEX5T15003000450060007500Min: 4428.86 / Avg: 4446.44 / Max: 4479.38Min: 6122.86 / Avg: 8902.27 / Max: 11024.761. (F9X) gfortran options: -fopenmp

OpenBenchmarking.orgTotal Mop/s, More Is BetterNAS Parallel Benchmarks 3.3Test / Class: UA.AtestEX5T1020304050SE +/- 0.12, N = 3SE +/- 3.97, N = 618.3842.071. (F9X) gfortran options: -fopenmp
OpenBenchmarking.orgTotal Mop/s, More Is BetterNAS Parallel Benchmarks 3.3Test / Class: UA.AtestEX5T918273645Min: 18.25 / Avg: 18.38 / Max: 18.61Min: 31.12 / Avg: 42.07 / Max: 55.051. (F9X) gfortran options: -fopenmp

Timed PHP Compilation

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed PHP Compilation 5.2.9Time To CompiletestEX5T1224364860SE +/- 0.45, N = 3SE +/- 0.14, N = 354.5227.881. (CC) gcc options: -O2 -pedantic -ldl -lz -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed PHP Compilation 5.2.9Time To CompiletestEX5T1122334455Min: 53.7 / Avg: 54.52 / Max: 55.24Min: 27.61 / Avg: 27.88 / Max: 28.031. (CC) gcc options: -O2 -pedantic -ldl -lz -lm