Computational-BiologyPhoronixRubinZ

Intel Core i7-3930K testing with a Intel DX79TO and eVGA NVIDIA GeForce GTX 550 Ti 1024MB on Ubuntu 14.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1502059-SO-COMPUTATI83
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February 05 2015
 
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Computational-BiologyPhoronixRubinZOpenBenchmarking.orgPhoronix Test SuiteIntel Core i7-3930K @ 3.20GHz (12 Cores)Intel DX79TOIntel Xeon E5/Core32768MB128GB OCZ VERTEX4eVGA NVIDIA GeForce GTX 550 Ti 1024MBRealtek ALC892VE248 + VE248Intel 82579LM Gigabit ConnectionUbuntu 14.043.13.0-45-generic (x86_64)Unity 7.2.3X Server 1.15.1nouveau 1.0.103.3 Mesa 10.1.3 Gallium 0.4GCC 4.8tmpfs1920x1080ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen ResolutionComputational-BiologyPhoronixRubinZ BenchmarksSystem Logs- --build=x86_64-linux-gnu --disable-browser-plugin --disable-libmudflap --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-multilib-list=m32,m64,mx32 --with-tune=generic -v - Scaling Governor: acpi-cpufreq ondemand

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchna246810SE +/- 0.04, N = 38.901. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignmentna1.1162.2323.3484.4645.58SE +/- 0.15, N = 64.961. (CC) gcc options: -O3 -lm -lpthread