med-git_bio

VMware testing on CentOS 6.4 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1305233-FO-MEDGITBIO74
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Result
Identifier
Performance Per
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Date
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  Duration
med-git_bio
May 23 2013
 
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med-git_bioOpenBenchmarking.orgPhoronix Test SuiteIntel Xeon X5355 @ 2.66GHz (2 Cores)Intel 440BXIntel 440BX/ZX/DX16384MB75GB Virtual disk + 107GB Virtual diskVMware SVGA IIVMware VMXNET3CentOS 6.42.6.32-358.el6.x86_64 (x86_64)KDE 4.3.4vmware 12.0.21.2 (1.5 Mesa 6.4.1)GCC 4.4.7 20120313nfs1594x1117VMwareProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelDesktopDisplay DriverOpenGLCompilerFile-SystemScreen ResolutionSystem LayerMed-git_bio BenchmarksSystem Logs- --build=x86_64-redhat-linux --disable-dssi --disable-libjava-multilib --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-unique-object --enable-java-awt=gtk --enable-java-maintainer-mode --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-libgcj-multifile --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=i686 --with-cloog --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --with-ppl --with-tune=generic

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchmed-git_bio1632486480SE +/- 1.14, N = 670.671. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignmentmed-git_bio612182430SE +/- 0.08, N = 325.351. (CC) gcc options: -O3 -lm -lpthread

Timed MrBayes Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny Analysismed-git_bio20406080100SE +/- 0.76, N = 3100.58