computational1

Intel Core i3-3220T testing with a Gigabyte Z77N-WIFI and Intel Xeon E3-1200 v2/3rd Gen Core on Debian 7.0 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1303148-BY-1303144BY38
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Bioinformatics 3 Tests
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computational1
March 14 2013
 
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March 14 2013
 
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computational1OpenBenchmarking.orgPhoronix Test SuiteIntel Core i3-3220T @ 2.80GHz (4 Cores)Gigabyte Z77N-WIFIIntel Xeon E3-1200 v2/3rd16384MB120GB INTEL SSDSC2CT12Intel Xeon E3-1200 v2/3rd Gen CoreRealtek ALC892Realtek RTL8111/8168B + Intel Centrino Wireless-N 2230Debian 7.03.2.0-4-amd64 (x86_64)GCC 4.7ext31024x768ProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelCompilerFile-SystemScreen ResolutionComputational1 BenchmarksSystem Logs- --build=x86_64-linux-gnu --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-languages=c,c++,go,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-arch-32=i586 --with-tune=generic -v

computational1scimark2: Compositefhourstones: Complex Connect-4 Solvingcrafty: Elapsed Timedcraw: RAW To PPM Image Conversionsudokut: Total Timenero2d: Total Timehmmer: Pfam Database Searchmafft: Multiple Sequence Alignmentmrbayes: Primate Phylogeny Analysisminion: Solitairecomputational1computational1-reproduce905.8710257.53100.3572.7826.98581.6726.1612.5431.66109.70912.7710252.80100.2072.8926.96580.5626.1312.8131.79109.69OpenBenchmarking.org

SciMark

OpenBenchmarking.orgMflops, More Is BetterSciMark 2.0Compositecomputational1computational1-reproduce2004006008001000SE +/- 5.47, N = 4SE +/- 0.46, N = 4905.87912.77
OpenBenchmarking.orgMflops, More Is BetterSciMark 2.0Compositecomputational1computational1-reproduce160320480640800Min: 895.07 / Avg: 905.87 / Max: 915.89Min: 911.83 / Avg: 912.77 / Max: 913.91

Fhourstones

OpenBenchmarking.orgKpos / sec, More Is BetterFhourstones 3.1Complex Connect-4 Solvingcomputational1computational1-reproduce2K4K6K8K10KSE +/- 3.36, N = 3SE +/- 8.76, N = 310257.5310252.801. (CC) gcc options: -O3
OpenBenchmarking.orgKpos / sec, More Is BetterFhourstones 3.1Complex Connect-4 Solvingcomputational1computational1-reproduce2K4K6K8K10KMin: 10253 / Avg: 10257.53 / Max: 10264.1Min: 10235.4 / Avg: 10252.8 / Max: 10263.21. (CC) gcc options: -O3

Crafty

OpenBenchmarking.orgSeconds, Fewer Is BetterCrafty 23.4Elapsed Timecomputational1computational1-reproduce20406080100SE +/- 0.03, N = 3SE +/- 0.07, N = 3100.35100.201. (CC) gcc options: -lstdc++ -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterCrafty 23.4Elapsed Timecomputational1computational1-reproduce20406080100Min: 100.3 / Avg: 100.35 / Max: 100.41Min: 100.07 / Avg: 100.2 / Max: 100.271. (CC) gcc options: -lstdc++ -lm

dcraw

This test times how long it takes to convert several high-resolution RAW NEF image files to PPM image format using dcraw. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterdcrawRAW To PPM Image Conversioncomputational1computational1-reproduce1632486480SE +/- 0.01, N = 3SE +/- 0.03, N = 372.7872.891. (CC) gcc options: -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterdcrawRAW To PPM Image Conversioncomputational1computational1-reproduce1428425670Min: 72.76 / Avg: 72.78 / Max: 72.8Min: 72.82 / Avg: 72.89 / Max: 72.931. (CC) gcc options: -lm

Sudokut

This is a test of Sudokut, which is a Sudoku puzzle solver written in Tcl. This test measures how long it takes to solve 100 Sudoku puzzles. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterSudokut 0.4Total Timecomputational1computational1-reproduce612182430SE +/- 0.04, N = 3SE +/- 0.01, N = 326.9826.96
OpenBenchmarking.orgSeconds, Fewer Is BetterSudokut 0.4Total Timecomputational1computational1-reproduce612182430Min: 26.91 / Avg: 26.98 / Max: 27.02Min: 26.94 / Avg: 26.96 / Max: 26.96

Open FMM Nero2D

OpenBenchmarking.orgSeconds, Fewer Is BetterOpen FMM Nero2D 2.0.2Total Timecomputational1computational1-reproduce130260390520650581.67580.561. (CXX) g++ options: -O2 -lfftw3 -llapack -lblas -lgfortran -lquadmath -lm

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchcomputational1computational1-reproduce612182430SE +/- 0.01, N = 3SE +/- 0.02, N = 326.1626.131. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchcomputational1computational1-reproduce612182430Min: 26.14 / Avg: 26.16 / Max: 26.17Min: 26.1 / Avg: 26.13 / Max: 26.171. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignmentcomputational1computational1-reproduce3691215SE +/- 0.22, N = 6SE +/- 0.35, N = 612.5412.811. (CC) gcc options: -O3 -lm -lpthread
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignmentcomputational1computational1-reproduce48121620Min: 11.86 / Avg: 12.54 / Max: 13.11Min: 11.85 / Avg: 12.81 / Max: 14.121. (CC) gcc options: -O3 -lm -lpthread

Timed MrBayes Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny Analysiscomputational1computational1-reproduce714212835SE +/- 0.08, N = 3SE +/- 0.04, N = 331.6631.79
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny Analysiscomputational1computational1-reproduce714212835Min: 31.54 / Avg: 31.66 / Max: 31.81Min: 31.7 / Avg: 31.79 / Max: 31.84

Minion

OpenBenchmarking.orgSeconds, Fewer Is BetterMinion 0.15Solitairecomputational1computational1-reproduce20406080100SE +/- 0.40, N = 3SE +/- 0.25, N = 3109.70109.691. (CXX) g++ options: -O3 -fomit-frame-pointer -rdynamic -lboost_iostreams-mt -lz -lbz2
OpenBenchmarking.orgSeconds, Fewer Is BetterMinion 0.15Solitairecomputational1computational1-reproduce20406080100Min: 109.17 / Avg: 109.7 / Max: 110.48Min: 109.22 / Avg: 109.69 / Max: 110.11. (CXX) g++ options: -O3 -fomit-frame-pointer -rdynamic -lboost_iostreams-mt -lz -lbz2