ubuntu-1204-ni-s7-computational-bio

AMD Athlon 64 X2 4600+ testing with a MSI MS-7309 v1.0 and ATI Radeon HD 4600 512MB on Ubuntu 12.04 via the Phoronix Test Suite.

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ni1
October 20 2012
 
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ni1

Processor: AMD Athlon 64 X2 4600+ @ 2.41GHz (2 Cores), Motherboard: MSI MS-7309 v1.0, Chipset: NVIDIA MCP61, Memory: 2048MB, Disk: 1000GB Hitachi HDT72101, Graphics: ATI Radeon HD 4600 512MB, Audio: Realtek ALC888, Monitor: VA2248

OS: Ubuntu 12.04, Kernel: 3.2.0-32-generic-pae (i686), Desktop: Unity 5.16.0, Display Server: X Server 1.11.3, Display Driver: fglrx 8.96.4, OpenGL: 3.3.11627, Compiler: GCC 4.6, File-System: ext3, Screen Resolution: 1920x1080

Compiler Notes: --build=i686-linux-gnu --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-languages=c,c++,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-targets=all --enable-threads=posix --host=i686-linux-gnu --target=i686-linux-gnu --with-arch-32=i686 --with-tune=generic -v
System Notes: Compiz was running on this system.

ubuntu-1204-ni-s7-computational-bioOpenBenchmarking.orgPhoronix Test SuiteAMD Athlon 64 X2 4600+ @ 2.41GHz (2 Cores)MSI MS-7309 v1.0NVIDIA MCP612048MB1000GB Hitachi HDT72101ATI Radeon HD 4600 512MBRealtek ALC888VA2248Ubuntu 12.043.2.0-32-generic-pae (i686)Unity 5.16.0X Server 1.11.3fglrx 8.96.43.3.11627GCC 4.6ext31920x1080ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorOSKernelDesktopDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen ResolutionUbuntu-1204-ni-s7-computational-bio BenchmarksSystem Logs- --build=i686-linux-gnu --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-languages=c,c++,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-targets=all --enable-threads=posix --host=i686-linux-gnu --target=i686-linux-gnu --with-arch-32=i686 --with-tune=generic -v - Compiz was running on this system.

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchni11632486480SE +/- 0.17, N = 370.091. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignmentni1816243240SE +/- 0.56, N = 333.701. (CC) gcc options: -O3 -lm -lpthread

Timed MrBayes Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny Analysisni11632486480SE +/- 0.11, N = 372.50

ni1

Processor: AMD Athlon 64 X2 4600+ @ 2.41GHz (2 Cores), Motherboard: MSI MS-7309 v1.0, Chipset: NVIDIA MCP61, Memory: 2048MB, Disk: 1000GB Hitachi HDT72101, Graphics: ATI Radeon HD 4600 512MB, Audio: Realtek ALC888, Monitor: VA2248

OS: Ubuntu 12.04, Kernel: 3.2.0-32-generic-pae (i686), Desktop: Unity 5.16.0, Display Server: X Server 1.11.3, Display Driver: fglrx 8.96.4, OpenGL: 3.3.11627, Compiler: GCC 4.6, File-System: ext3, Screen Resolution: 1920x1080

Compiler Notes: --build=i686-linux-gnu --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-languages=c,c++,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-targets=all --enable-threads=posix --host=i686-linux-gnu --target=i686-linux-gnu --with-arch-32=i686 --with-tune=generic -v
System Notes: Compiz was running on this system.

Testing initiated at 20 October 2012 23:29 by user jls.