nwubi_bio

Intel Xeon E5520 testing with a Dell 0K095G and NVIDIA Quadro NVS 295 512MB on Ubuntu 12.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1206011-BY-NWUBIBIO504
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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
bio1
June 01 2012
 
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nwubi_bioOpenBenchmarking.orgPhoronix Test SuiteIntel Xeon E5520 @ 2.27GHz (8 Cores)Dell 0K095GIntel 5520/5500/X58 + ICH10R6144MB750GB Western Digital WD7501AALS-7NVIDIA Quadro NVS 295 512MB (540/702MHz)Analog Devices AD1984ABroadcom NetXtreme BCM5761 Gigabit PCIeUbuntu 12.043.2.0-24-generic (x86_64)Unity 5.12.0X Server 1.11.3NVIDIA 295.403.3.0 NVIDIA 295.40GCC 4.6ext41680x1050ProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen ResolutionNwubi_bio BenchmarksSystem Logs- --build=x86_64-linux-gnu --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-languages=c,c++,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-arch-32=i686 --with-tune=generic -v - Compiz was running on this system.

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchbio1510152025SE +/- 0.10, N = 318.651. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignmentbio13691215SE +/- 0.23, N = 69.601. (CC) gcc options: -O3 -lm -lpthread

Timed MrBayes Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny Analysisbio1612182430SE +/- 0.02, N = 324.04