hmmer-amazon

Intel Xeon E5430 testing on Amazon Linux AMI 2012.03 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1205035-BY-HMMERAMAZ59
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Result
Identifier
View Logs
Performance Per
Dollar
Date
Run
  Test
  Duration
hmmer-amazon
May 03 2012
 


hmmer-amazonOpenBenchmarking.orgPhoronix Test SuiteIntel Xeon E5430 @ 2.66GHz (1 Core)595MB8GBAmazon Linux AMI 2012.033.2.12-3.2.4.amzn1.x86_64 (x86_64)GCC 4.4.6 20110731ext4ProcessorMemoryDiskOSKernelCompilerFile-SystemHmmer-amazon BenchmarksSystem Logs- --build=x86_64-amazon-linux --disable-gjdoc --disable-libgcj --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=i686 --with-cloog --with-ppl --with-tune=generic

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchhmmer-amazon150300450600750SE +/- 16.88, N = 6677.001. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm