Computational Biology echedey-500-500ns

AMD A8-6500 APU testing with a HP 2B35 v2.0 (80.06 BIOS) and NVD9 1024MB on PureOS 8 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1805072-FO-COMPUTATI89
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  Test
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AMD A8-6500 APU
May 07 2018
 
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Computational Biology echedey-500-500nsOpenBenchmarking.orgPhoronix Test SuiteAMD A8-6500 APU @ 3.50GHz (2 Cores / 4 Threads)HP 2B35 v2.0 (80.06 BIOS)AMD Family 15h16384MB1000GB Seagate ST1000DM003-1ER1 + 3001GB TOSHIBA DT01ACA3 + 1000GB External USB 3.0NVD9 1024MBRealtek ALC662 rev3Monitor TVRealtek RTL8111/8168/8411 + Realtek RTL8188EE WirelessPureOS 84.15.0-3-amd64 (x86_64)GNOME Shell 3.28.0Wayland4.3 Mesa 17.3.9GCC 7.3.0 + Clang 4.0.1-10ext41920x1080ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerOpenGLCompilerFile-SystemScreen ResolutionComputational Biology Echedey-500-500ns PerformanceSystem Logs- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic --without-cuda-driver -v - Scaling Governor: acpi-cpufreq ondemand- __user pointer sanitization + Full AMD retpoline Protection

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database SearchAMD A8-6500 APU510152025SE +/- 0.71, N = 622.221. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

This test performs an alignment of 100 pyruvate decarboxylase sequences. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.392Multiple Sequence AlignmentAMD A8-6500 APU3691215SE +/- 0.07, N = 311.161. (CC) gcc options: -std=c99 -O3 -lm -lpthread

Timed MrBayes Analysis

This test performs a bayesian analysis of a set of primate genome sequences in order to estimate their phylogeny. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny AnalysisAMD A8-6500 APU130260390520650SE +/- 0.66, N = 3612.811. (CC) gcc options: -O3 -msse -mfpmath=sse -march=native -lm -pthread -lmpi