decana

2 x Intel Xeon E5-2650 v3 testing with a Dell 0CNCJW (2.7.1 BIOS) and Matrox s G200eR2 on Debian 9.4 via the Phoronix Test Suite.

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Bioinformatics 3 Tests
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decanaOpenBenchmarking.orgPhoronix Test Suite2 x Intel Xeon E5-2650 v3 @ 3.00GHz (20 Cores / 40 Threads)Dell 0CNCJW (2.7.1 BIOS)Intel Xeon E7 v3/Xeon12 x 16384 MB DDR4-2133MHz HMA42GR7AFR4N-TF299GB PERC H330 MiniMatrox s G200eR2L1710BBroadcom Limited NetXtreme BCM5720 Gigabit PCIeDebian 9.44.13.16-1-pve (x86_64)GCC 6.3.0 20170516ext41280x1024ProcessorMotherboardChipsetMemoryDiskGraphicsMonitorNetworkOSKernelCompilerFile-SystemScreen ResolutionDecana BenchmarksSystem Logs- --build=x86_64-linux-gnu --disable-browser-plugin --disable-vtable-verify --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-default-libstdcxx-abi=new --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic -v - Scaling Governor: intel_pstate performance- KPTI + OSB (observable speculation barrier Intel v6) + Full generic retpoline IBPB (Intel v4) Protection - tre: DEADLINE / data=ordered,errors=remount-ro,relatime,rw- tre: Python 2.7.13 + Python 3.5.3

decanahmmer: Pfam Database Searchmafft: Multiple Sequence Alignmentfhourstones: Complex Connect-4 Solvingbyte: Dhrystone 2scimark2: Compositetscp: AI Chess Performancedcraw: RAW To PPM Image Conversionminion: Solitairesudokut: Total Timeramspeed: Integer Addramspeed: Integer Copyramspeed: Integer Scaleramspeed: Floating-Point Addstream: Addstream: Copystream: Scalecachebench: Read Cachecachebench: Write Cacheaio-stress: Rand Writesqlite: Timed SQLite Insertionsfs-mark: 1000 Files, 1MB Sizedbench: 12 Clientsdbench: 48 Clientsdbench: 128 Clientsdbench: 1 Clientstiobench: 64MB Rand Read - 32 Threadstiobench: 64MB Rand Write - 32 Threadscompilebench: Compilecompilebench: Initial Createcompilebench: Read Compiled Treeunpack-linux: linux-4.15.tar.xzpostmark: Disk Transaction Performancecompress-gzip: Linux Source Tree Archiving To .tar.gzapache: Static Web Page Servingx264: H.264 Video Encodinggraphics-magick: Resizinggraphics-magick: Local Adaptive Thresholdinghimeno: Poisson Pressure Solvercompress-7zip: Compress Speed Testbuild-php: Time To Compilec-ray: Total Timecompress-pbzip2: 256MB File Compressionpovray: Trace Timesmallpt: Global Illumination Renderer; 100 Samplesbullet: 1000 Convexminion: Solitaireminion: Quasigroupopenssl: RSA 4096-bit Performanceunoduetrequattro8.553.1510911.0326536909.92478.41102109462.24104.4015.7018730.6617181.3918731.0823132.4444344.0846952.1439484.922515.9920237.211979.57252.1141.5798.01145.65174.3223.9774433.5318.881340.97292.56614.999.01399052.8821502.228.963.19100.21155711602.306658466.156.623.3538.71227.40112.72172.532332.50OpenBenchmarking.org

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchunoquattro3691215SE +/- 0.03, N = 3SE +/- 0.11, N = 38.558.961. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchunoquattro3691215Min: 8.49 / Avg: 8.55 / Max: 8.59Min: 8.81 / Avg: 8.96 / Max: 9.171. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

This test performs an alignment of 100 pyruvate decarboxylase sequences. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.392Multiple Sequence Alignmentunoquattro0.71781.43562.15342.87123.589SE +/- 0.14, N = 6SE +/- 0.09, N = 63.153.191. (CC) gcc options: -std=c99 -O3 -lm -lpthread
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.392Multiple Sequence Alignmentunoquattro246810Min: 2.77 / Avg: 3.15 / Max: 3.7Min: 2.84 / Avg: 3.19 / Max: 3.471. (CC) gcc options: -std=c99 -O3 -lm -lpthread

Fhourstones

This integer benchmark solves positions in the game of Connect-4, as played on a vertical 7x6 board. By default, it uses a 64Mb transposition table with the twobig replacement strategy. Positions are represented as 64-bit bitboards, and the hash function is computed using a single 64-bit modulo operation, giving 64-bit machines a slight edge. The alpha-beta searcher sorts moves dynamically based on the history heuristic. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgKpos / sec, More Is BetterFhourstones 3.1Complex Connect-4 Solvinguno2K4K6K8K10KSE +/- 24.77, N = 310911.031. (CC) gcc options: -O3

BYTE Unix Benchmark

This is a test of BYTE. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgLPS, More Is BetterBYTE Unix Benchmark 3.6Dhrystone 2uno6M12M18M24M30MSE +/- 527725.43, N = 626536909.92

SciMark

OpenBenchmarking.orgMflops, More Is BetterSciMark 2.0Compositeuno100200300400500SE +/- 0.16, N = 3478.411. (CC) gcc options: -lm

TSCP

This is a performance test of TSCP, Tom Kerrigan's Simple Chess Program, which has a built-in performance benchmark. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNodes Per Second, More Is BetterTSCP 1.81AI Chess Performanceuno200K400K600K800K1000KSE +/- 463.44, N = 510210941. (CC) gcc options: -O3 -march=native

dcraw

This test times how long it takes to convert several high-resolution RAW NEF image files to PPM image format using dcraw. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterdcrawRAW To PPM Image Conversionuno1428425670SE +/- 0.42, N = 362.241. (CC) gcc options: -lm

Minion

Minion is an open-source constraint solver that is designed to be very scalable. This test profile uses Minion's integrated benchmarking problems to solve. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterMinion 1.8Solitaireuno20406080100SE +/- 0.73, N = 3104.401. (CXX) g++ options: -std=gnu++11 -O3 -fomit-frame-pointer -rdynamic

Sudokut

This is a test of Sudokut, which is a Sudoku puzzle solver written in Tcl. This test measures how long it takes to solve 100 Sudoku puzzles. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterSudokut 0.4Total Timeuno48121620SE +/- 0.04, N = 315.70

RAMspeed SMP

OpenBenchmarking.orgMB/s, More Is BetterRAMspeed SMP 3.5.0Integer Adddue4K8K12K16K20K18730.661. (CC) gcc options: -O3 -march=native

OpenBenchmarking.orgMB/s, More Is BetterRAMspeed SMP 3.5.0Integer Copydue4K8K12K16K20K17181.391. (CC) gcc options: -O3 -march=native

OpenBenchmarking.orgMB/s, More Is BetterRAMspeed SMP 3.5.0Integer Scaledue4K8K12K16K20K18731.081. (CC) gcc options: -O3 -march=native

OpenBenchmarking.orgMB/s, More Is BetterRAMspeed SMP 3.5.0Floating-Point Adddue5K10K15K20K25K23132.441. (CC) gcc options: -O3 -march=native

Stream

This benchmark tests the system memory (RAM) performance. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMB/s, More Is BetterStream 2013-01-17Adddue9K18K27K36K45KSE +/- 224.89, N = 544344.081. (CC) gcc options: -O3 -march=native -fopenmp

OpenBenchmarking.orgMB/s, More Is BetterStream 2013-01-17Copydue10K20K30K40K50KSE +/- 537.81, N = 546952.141. (CC) gcc options: -O3 -march=native -fopenmp

OpenBenchmarking.orgMB/s, More Is BetterStream 2013-01-17Scaledue8K16K24K32K40KSE +/- 413.17, N = 539484.921. (CC) gcc options: -O3 -march=native -fopenmp

CacheBench

This is a performance test of CacheBench, which is part of LLCbench. CacheBench is designed to test the memory and cache bandwidth performance Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMB/s, More Is BetterCacheBenchRead Cachedue5001000150020002500SE +/- 24.78, N = 32515.991. (CC) gcc options: -lrt

OpenBenchmarking.orgMB/s, More Is BetterCacheBenchWrite Cachedue4K8K12K16K20KSE +/- 375.41, N = 320237.211. (CC) gcc options: -lrt

AIO-Stress

AIO-Stress is an a-synchronous I/O benchmark created by SuSE. Current this profile uses a 2048MB test file and a 64KB record size. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMB/s, More Is BetterAIO-Stress 0.21Random Writetre400800120016002000SE +/- 24.55, N = 31979.571. (CC) gcc options: -pthread -laio

SQLite

This is a simple benchmark of SQLite. At present this test profile just measures the time to perform a pre-defined number of insertions on an indexed database. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterSQLite 3.22Timed SQLite Insertionstre60120180240300SE +/- 3.88, N = 6252.111. (CC) gcc options: -O2 -ldl -lpthread

FS-Mark

FS_Mark is designed to test a system's file-system performance. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgFiles/s, More Is BetterFS-Mark 3.31000 Files, 1MB Sizetre918273645SE +/- 0.20, N = 341.571. (CC) gcc options: -static

Dbench

Dbench is a benchmark designed by the Samba project as a free alternative to netbench, but dbench contains only file-system calls for testing the disk performance. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMB/s, More Is BetterDbench 4.012 Clientstre20406080100SE +/- 1.06, N = 398.011. (CC) gcc options: -lpopt -O2

OpenBenchmarking.orgMB/s, More Is BetterDbench 4.048 Clientstre306090120150SE +/- 1.47, N = 3145.651. (CC) gcc options: -lpopt -O2

OpenBenchmarking.orgMB/s, More Is BetterDbench 4.0128 Clientstre4080120160200SE +/- 0.91, N = 3174.321. (CC) gcc options: -lpopt -O2

OpenBenchmarking.orgMB/s, More Is BetterDbench 4.01 Clientstre612182430SE +/- 0.12, N = 323.971. (CC) gcc options: -lpopt -O2

Threaded I/O Tester

Tiotester (Threaded I/O Tester) benchmarks the hard disk drive / file-system performance. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMB/s, More Is BetterThreaded I/O Tester 2017050364MB Random Read - 32 Threadstre16K32K48K64K80KSE +/- 624.83, N = 374433.531. (CC) gcc options: -O2

OpenBenchmarking.orgMB/s, More Is BetterThreaded I/O Tester 2017050364MB Random Write - 32 Threadstre510152025SE +/- 0.25, N = 318.881. (CC) gcc options: -O2

Compile Bench

Compilebench tries to age a filesystem by simulating some of the disk IO common in creating, compiling, patching, stating and reading kernel trees. It indirectly measures how well filesystems can maintain directory locality as the disk fills up and directories age. This current test is setup to use the makej mode with 10 initial directories Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMB/s, More Is BetterCompile Bench 0.6Test: Compiletre30060090012001500SE +/- 39.04, N = 61340.97

OpenBenchmarking.orgMB/s, More Is BetterCompile Bench 0.6Test: Initial Createtre60120180240300SE +/- 10.98, N = 3292.56

OpenBenchmarking.orgMB/s, More Is BetterCompile Bench 0.6Test: Read Compiled Treetre130260390520650SE +/- 13.27, N = 3614.99

Unpacking The Linux Kernel

This test measures how long it takes to extract the .tar.xz Linux kernel package. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterUnpacking The Linux Kernellinux-4.15.tar.xztre3691215SE +/- 0.33, N = 89.01

PostMark

This is a test of NetApp's PostMark benchmark designed to simulate small-file testing similar to the tasks endured by web and mail servers. This test profile will set PostMark to perform 25,000 transactions with 500 files simultaneously with the file sizes ranging between 5 and 512 kilobytes. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgTPS, More Is BetterPostMark 1.51Disk Transaction Performancetre9001800270036004500SE +/- 42.00, N = 339901. (CC) gcc options: -O3

Gzip Compression

This test measures the time needed to archive/compress two copies of the Linux 4.13 kernel source tree using Gzip compression. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterGzip CompressionLinux Source Tree Archiving To .tar.gztre1224364860SE +/- 0.71, N = 652.88

Apache Benchmark

This is a test of ab, which is the Apache benchmark program. This test profile measures how many requests per second a given system can sustain when carrying out 1,000,000 requests with 100 requests being carried out concurrently. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgRequests Per Second, More Is BetterApache Benchmark 2.4.29Static Web Page Servingtre5K10K15K20K25KSE +/- 57.42, N = 321502.221. (CC) gcc options: -shared -fPIC -O2 -pthread

x264

OpenBenchmarking.orgFrames Per Second, More Is Betterx264 2018-02-05H.264 Video Encodingquattro20406080100SE +/- 1.39, N = 3100.211. (CC) gcc options: -ldl -m64 -lm -lpthread -O3 -ffast-math -std=gnu99 -fPIC -fomit-frame-pointer -fno-tree-vectorize

GraphicsMagick

OpenBenchmarking.orgIterations Per Minute, More Is BetterGraphicsMagick 1.3.28Operation: Resizingquattro306090120150SE +/- 2.33, N = 31551. (CC) gcc options: -fopenmp -O2 -pthread -ljbig -ltiff -ljpeg -lXext -lSM -lICE -lX11 -llzma -lbz2 -lz -lm -lgomp -lpthread

OpenBenchmarking.orgIterations Per Minute, More Is BetterGraphicsMagick 1.3.28Operation: Local Adaptive Thresholdingquattro1632486480711. (CC) gcc options: -fopenmp -O2 -pthread -ljbig -ltiff -ljpeg -lXext -lSM -lICE -lX11 -llzma -lbz2 -lz -lm -lgomp -lpthread

Himeno Benchmark

The Himeno benchmark is a linear solver of pressure Poisson using a point-Jacobi method. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure Solverquattro30060090012001500SE +/- 4.32, N = 31602.301. (CC) gcc options: -O3 -mavx2

7-Zip Compression

This is a test of 7-Zip using p7zip with its integrated benchmark feature or upstream 7-Zip for the Windows x64 build. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMIPS, More Is Better7-Zip Compression 16.02Compress Speed Testquattro14K28K42K56K70KSE +/- 333.44, N = 3665841. (CXX) g++ options: -pipe -lpthread

Timed PHP Compilation

This test times how long it takes to build PHP 5 with the Zend engine. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed PHP Compilation 7.1.9Time To Compilequattro1530456075SE +/- 0.64, N = 366.151. (CC) gcc options: -O2 -pedantic -ldl -lz -lm

C-Ray

OpenBenchmarking.orgSeconds, Fewer Is BetterC-Ray 1.1Total Timequattro246810SE +/- 0.01, N = 36.621. (CC) gcc options: -lm -lpthread -O3

Parallel BZIP2 Compression

This test measures the time needed to compress a file (a .tar package of the Linux kernel source code) using BZIP2 compression. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterParallel BZIP2 Compression 1.1.12256MB File Compressionquattro0.75381.50762.26143.01523.769SE +/- 0.04, N = 33.351. (CXX) g++ options: -O2 -pthread -lbz2 -lpthread

POV-Ray

This is a test of POV-Ray, the Persistence of Vision Raytracer. POV-Ray is used to create 3D graphics using ray-tracing. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterPOV-Ray 3.7.0.7Trace Timequattro918273645SE +/- 0.02, N = 338.711. (CXX) g++ options: -pipe -O3 -ffast-math -march=native -pthread -lSM -lICE -lX11 -ltiff -ljpeg -lpng -lz -lrt -lm -lboost_thread -lboost_system

Smallpt

OpenBenchmarking.orgSeconds, Fewer Is BetterSmallpt 1.0Global Illumination Renderer; 100 Samplesquattro510152025221. (CXX) g++ options: -fopenmp

Bullet Physics Engine

This is a benchmark of the Bullet Physics Engine. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterBullet Physics Engine 2.81Test: 1000 Convexquattro246810SE +/- 0.12, N = 67.401. (CXX) g++ options: -O3 -rdynamic -lglut -lGL -lGLU

Minion

Minion is an open-source constraint solver that is designed to be very scalable. This test profile uses Minion's integrated benchmarking problems to solve. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterMinion 1.8Benchmark: Solitairequattro306090120150SE +/- 2.62, N = 6112.721. (CXX) g++ options: -std=gnu++11 -O3 -fomit-frame-pointer -rdynamic

OpenBenchmarking.orgSeconds, Fewer Is BetterMinion 1.8Benchmark: Quasigroupquattro4080120160200SE +/- 0.81, N = 3172.531. (CXX) g++ options: -std=gnu++11 -O3 -fomit-frame-pointer -rdynamic

OpenSSL

OpenSSL is an open-source toolkit that implements SSL (Secure Sockets Layer) and TLS (Transport Layer Security) protocols. This test measures the RSA 4096-bit performance of OpenSSL. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSigns Per Second, More Is BetterOpenSSL 1.1.0fRSA 4096-bit Performancequattro5001000150020002500SE +/- 1.36, N = 32332.501. (CC) gcc options: -O3 -pthread -m64 -lssl -lcrypto -ldl