Cortex A53 HMMER testing

aarch64 GCC HMMER performance comparison

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1711130-AL-HMMERTEST35
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5.4
November 13 2017
 
6.3
November 13 2017
 
7.2
November 13 2017
 
8.0
November 13 2017
 
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Cortex A53 HMMER testingOpenBenchmarking.orgPhoronix Test SuiteUnknown @ 1.54GHz (4 Cores)Amlogic2048MB64GB Card Reader + 16GB NCard + 32GB 00000OSDUbuntu 16.043.14.79-vegas95 (aarch64)GCC 5.4.0 20160609 + Clang 3.8.0-2ubuntu4 + LLVM 3.8.0GCC 6.3.1 20170316 + Clang 3.8.0-2ubuntu4 + LLVM 3.8.0GCC 7.2.1 20170817 + Clang 3.8.0-2ubuntu4 + LLVM 3.8.0GCC 8.0.0 20171111 + Clang 3.8.0-2ubuntu4 + LLVM 3.8.0ext41280x1440ProcessorMotherboardMemoryDiskGraphicsOSKernelCompilersFile-SystemScreen ResolutionCortex A53 HMMER Testing BenchmarksSystem Logs- 5.4: --build=aarch64-linux-gnu --disable-browser-plugin --disable-libquadmath --disable-werror --enable-checking=release --enable-clocale=gnu --enable-fix-cortex-a53-843419 --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-plugin --enable-shared --enable-threads=posix --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-arch-directory=aarch64 --with-default-libstdcxx-abi=new -v - 6.3: --build=aarch64-linux-gnu --disable-bootstrap --disable-browser-plugin --disable-libquadmath --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-languages=c,c++,fortran --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-plugin --enable-shared --enable-threads=posix --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-arch-directory=aarch64 --with-default-libstdcxx-abi=new - 7.2: --build=aarch64-linux-gnu --disable-bootstrap --disable-browser-plugin --disable-libquadmath --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-languages=c,c++,fortran --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-plugin --enable-shared --enable-threads=posix --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-arch-directory=aarch64 --with-default-libstdcxx-abi=new - 8.0: --build=aarch64-linux-gnu --disable-bootstrap --disable-browser-plugin --disable-libquadmath --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-languages=c,c++,fortran --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-plugin --enable-shared --enable-threads=posix --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-arch-directory=aarch64 --with-default-libstdcxx-abi=new - Scaling Governor: meson_cpufreq performance

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Search5.46.37.28.020406080100SE +/- 0.11, N = 3SE +/- 0.19, N = 3SE +/- 0.20, N = 3SE +/- 0.24, N = 384.3780.5981.1059.611. (CC) gcc options: -Ofast -mcpu=cortex-a53 -fomit-frame-pointer -fipa-pta -march=armv8-a+crc -ftree-vectorize -frename-registers -pthread -lhmmer -lsquid -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Search5.46.37.28.01632486480Min: 84.2 / Avg: 84.37 / Max: 84.56Min: 80.26 / Avg: 80.59 / Max: 80.91Min: 80.85 / Avg: 81.1 / Max: 81.49Min: 59.26 / Avg: 59.61 / Max: 60.081. (CC) gcc options: -Ofast -mcpu=cortex-a53 -fomit-frame-pointer -fipa-pta -march=armv8-a+crc -ftree-vectorize -frename-registers -pthread -lhmmer -lsquid -lm