computational-biology-20170928161114

20170928161114

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20170928161114
September 28 2017
 
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20170928161114

Processor: 2 x Intel Core (Broadwell) @ 2.10GHz (2 Cores), Motherboard: OpenStack Foundation Nova v13.1.2, Memory: 8192MB, Disk: 25GB, Graphics: EFI VGA

OS: Ubuntu 16.04.3 LTS, Kernel: 4.4.0-92-generic (x86_64), Compiler: GCC 5.4.0 20160609, File-System: aufs, Screen Resolution: 800x600, System Layer: docker

Compiler Notes: --build=x86_64-linux-gnu --disable-browser-plugin --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-default-libstdcxx-abi=new --with-multilib-list=m32,m64,mx32 --with-tune=generic -v

computational-biology-20170928161114OpenBenchmarking.orgPhoronix Test Suite2 x Intel Core (Broadwell) @ 2.10GHz (2 Cores)OpenStack Foundation Nova v13.1.28192MB25GBEFI VGAUbuntu 16.04.3 LTS4.4.0-92-generic (x86_64)GCC 5.4.0 20160609aufs800x600dockerProcessorMotherboardMemoryDiskGraphicsOSKernelCompilerFile-SystemScreen ResolutionSystem LayerComputational-biology-20170928161114 BenchmarksSystem Logs- --build=x86_64-linux-gnu --disable-browser-plugin --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-default-libstdcxx-abi=new --with-multilib-list=m32,m64,mx32 --with-tune=generic -v

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Search20170928161114612182430SE +/- 0.22, N = 1026.351. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignment20170928161114246810SE +/- 0.15, N = 208.861. (CC) gcc options: -O3 -lm -lpthread

Timed MrBayes Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny Analysis20170928161114160320480640800SE +/- 13.51, N = 20740.89

20170928161114

Processor: 2 x Intel Core (Broadwell) @ 2.10GHz (2 Cores), Motherboard: OpenStack Foundation Nova v13.1.2, Memory: 8192MB, Disk: 25GB, Graphics: EFI VGA

OS: Ubuntu 16.04.3 LTS, Kernel: 4.4.0-92-generic (x86_64), Compiler: GCC 5.4.0 20160609, File-System: aufs, Screen Resolution: 800x600, System Layer: docker

Compiler Notes: --build=x86_64-linux-gnu --disable-browser-plugin --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-default-libstdcxx-abi=new --with-multilib-list=m32,m64,mx32 --with-tune=generic -v

Testing initiated at 28 September 2017 16:11 by user root.