paulc-48cores-native

Running pts/mafft-1.4.0 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1611121-KH-1207025BY46
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Bioinformatics 2 Tests
C/C++ Compiler Tests 2 Tests
CPU Massive 2 Tests
HPC - High Performance Computing 2 Tests
Scientific Computing 2 Tests

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2012-07-02 14:29
July 02 2012
 
AMD Opteron 6168
November 12 2016
 
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paulc-48cores-nativeProcessorMotherboardChipsetMemoryDiskGraphicsNetworkAudioOSKernelDesktopDisplay ServerDisplay DriverCompilerFile-SystemScreen ResolutionOpenGL2012-07-02 14:29AMD Opteron 61684 x Intel Xeon E7- 4850 @ 2.00GHz (48 Cores)Dell 0JRJM9Intel 5520/5500/X58 + ICH10516096MB898GB PERC H700 + 19998GB PERC H800Matrox MGA G200eW WPCM450Broadcom NetXtreme II BCM5709 GigabitUbuntu 12.043.2.0-26-generic (x86_64)Unity 2D 5.12.0X Server 1.11.3vesa 2.3.0GCC 4.6ext41024x7684 x AMD Opteron 6168 @ 0.80GHz (48 Cores)Supermicro H8QG6AMD RD890 + SB7x0/SB8x0/SB9x032768MB32GB SanDisk SSD U100 + 250GB Samsung SSD 850NVIDIA GeForce GTX 970 4096MB (135/324MHz)NVIDIA GM204 HD AudioIntel 82576 Gigabit ConnectionUbuntu 16.044.8.7-040807-generic (x86_64)KDE Frameworks 5X Server 1.18.4NVIDIA 375.104.5.0GCC 5.4.0 20160609 + Clang 3.8.0-2ubuntu4 + CUDA 7.51920x1080OpenBenchmarking.orgCompiler Details- 2012-07-02 14:29: --build=x86_64-linux-gnu --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-languages=c,c++,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-arch-32=i686 --with-tune=generic -v - AMD Opteron 6168: --build=x86_64-linux-gnu --disable-browser-plugin --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-default-libstdcxx-abi=new --with-multilib-list=m32,m64,mx32 --with-tune=generic -v Environment Details- AMD Opteron 6168: wiki_indri_index=/home/jamie/lucida/tools/wiki_indri_indexProcessor Details- AMD Opteron 6168: Scaling Governor: acpi-cpufreq ondemand

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Search2012-07-02 14:29612182430SE +/- 0.16, N = 327.171. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignment2012-07-02 14:29AMD Opteron 6168612182430SE +/- 0.30, N = 3SE +/- 0.62, N = 624.7615.861. (CC) gcc options: -O3 -lm -lpthread
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignment2012-07-02 14:29AMD Opteron 6168612182430Min: 24.3 / Avg: 24.76 / Max: 25.33Min: 14.94 / Avg: 15.86 / Max: 18.871. (CC) gcc options: -O3 -lm -lpthread