Pairwise Alignment Test Suite (multi-vs-single-core)

Intel Core i7-6700 testing with a Dell 0HD5W2 and Intel Device 1912 on Debian 8.5 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1608244-HA-PAIRWISEA58
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single-core
August 04 2016
 
multi-core
August 04 2016
 
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single-core

Compiler Notes: --build=x86_64-linux-gnu --disable-browser-plugin --disable-vtable-verify --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i586 --with-arch-directory=amd64 --with-multilib-list=m32,m64,mx32 --with-tune=generic -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand

multi-core

Processor: Intel Core i7-6700 @ 3.40GHz (8 Cores), Motherboard: Dell 0HD5W2, Chipset: Intel Device 191f, Memory: 16384MB, Disk: 16251GB, Graphics: Intel Device 1912, Audio: Intel Device a170, Monitor: DELL U2715H, Network: Intel Connection

OS: Debian 8.5, Kernel: 3.16.0-4-amd64 (x86_64), Desktop: GNOME Shell 3.14.4, Display Server: X Server 1.16.4, Display Driver: intel 2.21.15, Compiler: GCC 4.9.2 + Clang 3.5.0-10 + LLVM 3.5.0 + ICC, File-System: nfs

Pairwise Alignment Test Suite (multi-vs-single-core)OpenBenchmarking.orgPhoronix Test SuiteIntel Core i7-6700 @ 3.40GHz (8 Cores)Dell 0HD5W2Intel Device 191f16384MB16251GBIntel Device 1912Intel Device a170DELL U2715HIntel ConnectionDebian 8.53.16.0-4-amd64 (x86_64)GNOME Shell 3.14.4X Server 1.16.4intel 2.21.15GCC 4.9.2 + Clang 3.5.0-10 + LLVM 3.5.0 + ICCnfsProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerDisplay DriverCompilerFile-SystemPairwise Alignment Test Suite (multi-vs-single-core) BenchmarksSystem Logs- --build=x86_64-linux-gnu --disable-browser-plugin --disable-vtable-verify --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i586 --with-arch-directory=amd64 --with-multilib-list=m32,m64,mx32 --with-tune=generic -v - Scaling Governor: acpi-cpufreq ondemand

Pairwise Alignment Test Suite (multi-vs-single-core)seqan-test-pairwise-alignment: Local DNA Affine alignmentseqan-test-pairwise-alignment: Local DNA Linear alignmentseqan-test-pairwise-alignment: Global DNA Affine alignmentseqan-test-pairwise-alignment: Global DNA Linear alignmentseqan-test-pairwise-alignment: Local Protein Affine alignmentseqan-test-pairwise-alignment: Local Protein Linear alignmentseqan-test-pairwise-alignment: Global Protein Affine alignmentseqan-test-pairwise-alignment: Global Protein Linear alignmentsingle-coremulti-core277.52233.80237.51172.02274.54224.67250.41182.99276.87233.63237.95172.53272.20224.52250.85185.25OpenBenchmarking.org

SEQAN TEST Counting kmers of variable length

OpenBenchmarking.orgSeconds, Fewer Is BetterSEQAN TEST Counting kmers of variable length 2.2.0Local DNA Affine alignmentsingle-coremulti-core60120180240300SE +/- 1.36, N = 3SE +/- 1.59, N = 3277.52276.871. (CXX) clang++ options: -std=c++11 -std=c++14 -O3 -rdynamic -lrt -lpthread
OpenBenchmarking.orgSeconds, Fewer Is BetterSEQAN TEST Counting kmers of variable length 2.2.0Local DNA Affine alignmentsingle-coremulti-core50100150200250Min: 275.07 / Avg: 277.52 / Max: 279.76Min: 275.23 / Avg: 276.87 / Max: 280.041. (CXX) clang++ options: -std=c++11 -std=c++14 -O3 -rdynamic -lrt -lpthread

OpenBenchmarking.orgSeconds, Fewer Is BetterSEQAN TEST Counting kmers of variable length 2.2.0Local DNA Linear alignmentsingle-coremulti-core50100150200250SE +/- 0.24, N = 3SE +/- 0.05, N = 3233.80233.631. (CXX) clang++ options: -std=c++11 -std=c++14 -O3 -rdynamic -lrt -lpthread
OpenBenchmarking.orgSeconds, Fewer Is BetterSEQAN TEST Counting kmers of variable length 2.2.0Local DNA Linear alignmentsingle-coremulti-core4080120160200Min: 233.54 / Avg: 233.8 / Max: 234.27Min: 233.54 / Avg: 233.63 / Max: 233.711. (CXX) clang++ options: -std=c++11 -std=c++14 -O3 -rdynamic -lrt -lpthread

OpenBenchmarking.orgSeconds, Fewer Is BetterSEQAN TEST Counting kmers of variable length 2.2.0Global DNA Affine alignmentsingle-coremulti-core50100150200250SE +/- 0.36, N = 3SE +/- 0.49, N = 3237.51237.951. (CXX) clang++ options: -std=c++11 -std=c++14 -O3 -rdynamic -lrt -lpthread
OpenBenchmarking.orgSeconds, Fewer Is BetterSEQAN TEST Counting kmers of variable length 2.2.0Global DNA Affine alignmentsingle-coremulti-core4080120160200Min: 236.93 / Avg: 237.51 / Max: 238.18Min: 237.41 / Avg: 237.95 / Max: 238.931. (CXX) clang++ options: -std=c++11 -std=c++14 -O3 -rdynamic -lrt -lpthread

OpenBenchmarking.orgSeconds, Fewer Is BetterSEQAN TEST Counting kmers of variable length 2.2.0Global DNA Linear alignmentsingle-coremulti-core4080120160200SE +/- 0.03, N = 3SE +/- 0.47, N = 3172.02172.531. (CXX) clang++ options: -std=c++11 -std=c++14 -O3 -rdynamic -lrt -lpthread
OpenBenchmarking.orgSeconds, Fewer Is BetterSEQAN TEST Counting kmers of variable length 2.2.0Global DNA Linear alignmentsingle-coremulti-core306090120150Min: 171.98 / Avg: 172.02 / Max: 172.08Min: 172.05 / Avg: 172.53 / Max: 173.471. (CXX) clang++ options: -std=c++11 -std=c++14 -O3 -rdynamic -lrt -lpthread

OpenBenchmarking.orgSeconds, Fewer Is BetterSEQAN TEST Counting kmers of variable length 2.2.0Local Protein Affine alignmentsingle-coremulti-core60120180240300SE +/- 1.07, N = 3SE +/- 1.36, N = 3274.54272.201. (CXX) clang++ options: -std=c++11 -std=c++14 -O3 -rdynamic -lrt -lpthread
OpenBenchmarking.orgSeconds, Fewer Is BetterSEQAN TEST Counting kmers of variable length 2.2.0Local Protein Affine alignmentsingle-coremulti-core50100150200250Min: 272.69 / Avg: 274.54 / Max: 276.4Min: 270.71 / Avg: 272.2 / Max: 274.911. (CXX) clang++ options: -std=c++11 -std=c++14 -O3 -rdynamic -lrt -lpthread

OpenBenchmarking.orgSeconds, Fewer Is BetterSEQAN TEST Counting kmers of variable length 2.2.0Local Protein Linear alignmentsingle-coremulti-core50100150200250SE +/- 0.18, N = 3SE +/- 0.22, N = 3224.67224.521. (CXX) clang++ options: -std=c++11 -std=c++14 -O3 -rdynamic -lrt -lpthread
OpenBenchmarking.orgSeconds, Fewer Is BetterSEQAN TEST Counting kmers of variable length 2.2.0Local Protein Linear alignmentsingle-coremulti-core4080120160200Min: 224.34 / Avg: 224.67 / Max: 224.97Min: 224.12 / Avg: 224.52 / Max: 224.881. (CXX) clang++ options: -std=c++11 -std=c++14 -O3 -rdynamic -lrt -lpthread

OpenBenchmarking.orgSeconds, Fewer Is BetterSEQAN TEST Counting kmers of variable length 2.2.0Global Protein Affine alignmentsingle-coremulti-core50100150200250SE +/- 1.67, N = 3SE +/- 0.33, N = 3250.41250.851. (CXX) clang++ options: -std=c++11 -std=c++14 -O3 -rdynamic -lrt -lpthread
OpenBenchmarking.orgSeconds, Fewer Is BetterSEQAN TEST Counting kmers of variable length 2.2.0Global Protein Affine alignmentsingle-coremulti-core50100150200250Min: 248.74 / Avg: 250.41 / Max: 253.75Min: 250.3 / Avg: 250.85 / Max: 251.441. (CXX) clang++ options: -std=c++11 -std=c++14 -O3 -rdynamic -lrt -lpthread

OpenBenchmarking.orgSeconds, Fewer Is BetterSEQAN TEST Counting kmers of variable length 2.2.0Global Protein Linear alignmentsingle-coremulti-core4080120160200SE +/- 1.20, N = 3SE +/- 3.10, N = 3182.99185.251. (CXX) clang++ options: -std=c++11 -std=c++14 -O3 -rdynamic -lrt -lpthread
OpenBenchmarking.orgSeconds, Fewer Is BetterSEQAN TEST Counting kmers of variable length 2.2.0Global Protein Linear alignmentsingle-coremulti-core306090120150Min: 181.78 / Avg: 182.99 / Max: 185.39Min: 181.89 / Avg: 185.25 / Max: 191.441. (CXX) clang++ options: -std=c++11 -std=c++14 -O3 -rdynamic -lrt -lpthread

single-core

Compiler Notes: --build=x86_64-linux-gnu --disable-browser-plugin --disable-vtable-verify --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i586 --with-arch-directory=amd64 --with-multilib-list=m32,m64,mx32 --with-tune=generic -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand

Testing initiated at 4 August 2016 15:51 by user smehringer.

multi-core

Processor: Intel Core i7-6700 @ 3.40GHz (8 Cores), Motherboard: Dell 0HD5W2, Chipset: Intel Device 191f, Memory: 16384MB, Disk: 16251GB, Graphics: Intel Device 1912, Audio: Intel Device a170, Monitor: DELL U2715H, Network: Intel Connection

OS: Debian 8.5, Kernel: 3.16.0-4-amd64 (x86_64), Desktop: GNOME Shell 3.14.4, Display Server: X Server 1.16.4, Display Driver: intel 2.21.15, Compiler: GCC 4.9.2 + Clang 3.5.0-10 + LLVM 3.5.0 + ICC, File-System: nfs

Compiler Notes: --build=x86_64-linux-gnu --disable-browser-plugin --disable-vtable-verify --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i586 --with-arch-directory=amd64 --with-multilib-list=m32,m64,mx32 --with-tune=generic -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand

Testing initiated at 4 August 2016 17:26 by user smehringer.