computational-biologyk

computational-biologyk

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computational-biologyk
June 07 2016
 
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computational-biologyk

Processor: Intel Xeon E5-2680 v3 @ 2.49GHz (4 Cores), Motherboard: Red Hat KVM, Chipset: Intel 440FX- 82441FX PMC, Memory: 1 x 8192 MB RAM, Disk: 20GB, Graphics: Cirrus Logic GD 5446, Network: Red Hat Virtio device

OS: CentOS 6.5, Kernel: 2.6.32-431.29.2.el6.x86_64 (x86_64), Compiler: GCC 4.4.7 20120313, File-System: ext4

Compiler Notes: --build=x86_64-redhat-linux --disable-dssi --disable-libjava-multilib --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-unique-object --enable-java-awt=gtk --enable-java-maintainer-mode --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-libgcj-multifile --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=i686 --with-cloog --with-ppl --with-tune=generic

computational-biologykOpenBenchmarking.orgPhoronix Test SuiteIntel Xeon E5-2680 v3 @ 2.49GHz (4 Cores)Red Hat KVMIntel 440FX- 82441FX PMC1 x 8192 MB RAM20GBCirrus Logic GD 5446Red Hat Virtio deviceCentOS 6.52.6.32-431.29.2.el6.x86_64 (x86_64)GCC 4.4.7 20120313ext4ProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelCompilerFile-SystemComputational-biologyk BenchmarksSystem Logs- --build=x86_64-redhat-linux --disable-dssi --disable-libjava-multilib --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-unique-object --enable-java-awt=gtk --enable-java-maintainer-mode --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-libgcj-multifile --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=i686 --with-cloog --with-ppl --with-tune=generic

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchcomputational-biologyk510152025SE +/- 0.05, N = 319.071. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignmentcomputational-biologyk246810SE +/- 0.20, N = 68.641. (CC) gcc options: -O3 -lm -lpthread

Timed MrBayes Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny Analysiscomputational-biologyk1326395265SE +/- 0.63, N = 359.17

computational-biologyk

Processor: Intel Xeon E5-2680 v3 @ 2.49GHz (4 Cores), Motherboard: Red Hat KVM, Chipset: Intel 440FX- 82441FX PMC, Memory: 1 x 8192 MB RAM, Disk: 20GB, Graphics: Cirrus Logic GD 5446, Network: Red Hat Virtio device

OS: CentOS 6.5, Kernel: 2.6.32-431.29.2.el6.x86_64 (x86_64), Compiler: GCC 4.4.7 20120313, File-System: ext4

Compiler Notes: --build=x86_64-redhat-linux --disable-dssi --disable-libjava-multilib --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-unique-object --enable-java-awt=gtk --enable-java-maintainer-mode --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-libgcj-multifile --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=i686 --with-cloog --with-ppl --with-tune=generic

Testing initiated at 7 June 2016 21:29 by user root.