Rasp2-HMMER

ARMv7 rev 5 testing with a BCM2709 and Gallium 0.4 on VC4 on Raspbian 8.0 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1604264-SO-RASP2HMME31
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Result
Identifier
View Logs
Performance Per
Dollar
Date
Run
  Test
  Duration
Jovaneps
April 26 2016
 


Rasp2-HMMEROpenBenchmarking.orgPhoronix Test SuiteARMv7 rev 5 @ 0.90GHz (4 Cores)BCM2709861MB32GB 00000Gallium 0.4 on VC4273ELHRaspbian 8.04.1.19-v7+ (armv7l)LXDE 0.7.2X Server 1.17.2modesetting 1.17.22.1 Mesa 11.1.0 Gallium 0.4GCC 4.9.2ext41920x1080ProcessorMotherboardMemoryDiskGraphicsMonitorOSKernelDesktopDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen ResolutionRasp2-HMMER BenchmarksSystem Logs- --build=arm-linux-gnueabihf --disable-browser-plugin --disable-libitm --disable-libquadmath --disable-sjlj-exceptions --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf --with-arch-directory=arm --with-arch=armv6 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-float=hard --with-fpu=vfp --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.9-armhf/jre --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.9-armhf --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.9-armhf -v - Scaling Governor: BCM2835 Freq ondemand

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database SearchJovaneps50100150200250SE +/- 0.26, N = 3221.091. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm