DL20vsSHORTY

Intel Xeon E3-1220 v5 testing with a Supermicro X11SSL-F v1.01 and ASPEED ASPEED Family on Ubuntu 14.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1603036-SO-1603034SO41
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Bioinformatics 2 Tests
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SHORTY
March 02 2016
 
DL20
March 03 2016
 
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DL20vsSHORTYProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelCompilerFile-SystemScreen ResolutionSHORTYDL20Intel Xeon E3-1220 v5 @ 3.00GHz (4 Cores)Supermicro X11SSL-F v1.01Intel Sky Lake /DRAM2 x 16384 MB 2133MHz500GB Samsung SSD 850 + 120GB Samsung SSD 850ASPEED ASPEED FamilyIntel I210 Gigabit ConnectionUbuntu 14.043.19.0-25-generic (x86_64)GCC 4.8ext41024x768HP ProLiant DL20 Gen94 x 8192 MB 2133MHz120GB Samsung SSD 850 + 500GB Samsung SSD 850Matrox s MGA G200EHBroadcom NetXtreme BCM5720 Gigabit PCIeOpenBenchmarking.orgCompiler Details- --build=x86_64-linux-gnu --disable-browser-plugin --disable-libmudflap --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-multilib-list=m32,m64,mx32 --with-tune=generic -v Disk Details- DEADLINE / data=ordered,errors=remount-ro,relatime,rwProcessor Details- SHORTY: Scaling Governor: acpi-cpufreq ondemand- DL20: Scaling Governor: pcc-cpufreq performanceSystem Details- Disk Scheduler: DEADLINE. Python 2.7.6.

SHORTY vs. DL20 ComparisonPhoronix Test SuiteBaseline+302.1%+302.1%+604.2%+604.2%+906.3%+906.3%15.6%12 Clients687.8%64MB Write - 32 Threads195.6%T.S.I1208.4%H.2.H.T.N.DDbenchThreaded I/O TesterSQLiteFFmpegSHORTYDL20

DL20vsSHORTYsqlite: Timed SQLite Insertionsdbench: 12 Clientstiobench: 64MB Read - 32 Threadstiobench: 64MB Write - 32 Threadspostmark: Disk Transaction Performancehmmer: Pfam Database Searchmafft: Multiple Sequence Alignmentgmpbench: Total Timegraphics-magick: HWB Color Spacegraphics-magick: Local Adaptive Thresholdingc-ray: Total Timecompress-pbzip2: 256MB File Compressioncompress-lzma: 256MB File Compressioncrafty: Elapsed Timedcraw: RAW To PPM Image Conversionencode-mp3: WAV To MP3ffmpeg: H.264 HD To NTSC DVgnupg: 1GB File Encryptionminion: Solitairenero2d: Total Timesudokut: Total Timetachyon: Total Timeopenssl: RSA 4096-bit Performancepybench: Total For Average Test Timesapache: Static Web Page Servingsunflow: Global Illumination + Image SynthesisSHORTYDL2029.321045.8418742.1810.11652211.116.2743771859423.3312.41267.2470.3046.5413.6411.357.4968.75491.6513.2214.38563.80138245762.033.37383.63132.7518975.763.42646611.016.254355.601859323.4312.50267.9470.7446.7713.719.827.5068.64494.6813.0314.44559.50138345464.443.40OpenBenchmarking.org

SQLite

This is a simple benchmark of SQLite. At present this test profile just measures the time to perform a pre-defined number of insertions on an indexed database. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterSQLite 3.8.10.2Timed SQLite InsertionsSHORTYDL2080160240320400SE +/- 0.08, N = 3SE +/- 0.03, N = 329.32383.631. (CC) gcc options: -O2 -ldl -lpthread
OpenBenchmarking.orgSeconds, Fewer Is BetterSQLite 3.8.10.2Timed SQLite InsertionsSHORTYDL2070140210280350Min: 29.17 / Avg: 29.32 / Max: 29.46Min: 383.56 / Avg: 383.63 / Max: 383.661. (CC) gcc options: -O2 -ldl -lpthread

Dbench

Dbench is a benchmark designed by the Samba project as a free alternative to netbench, but dbench contains only file-system calls for testing the disk performance. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMB/s, More Is BetterDbench 4.012 ClientsSHORTYDL202004006008001000SE +/- 2.72, N = 3SE +/- 2.23, N = 31045.84132.751. (CC) gcc options: -lpopt -O2
OpenBenchmarking.orgMB/s, More Is BetterDbench 4.012 ClientsSHORTYDL202004006008001000Min: 1040.44 / Avg: 1045.84 / Max: 1049.09Min: 129.42 / Avg: 132.75 / Max: 136.991. (CC) gcc options: -lpopt -O2

Threaded I/O Tester

OpenBenchmarking.orgMB/s, More Is BetterThreaded I/O Tester 0.3.364MB Read - 32 ThreadsSHORTYDL204K8K12K16K20KSE +/- 10.36, N = 3SE +/- 16.44, N = 318742.1818975.76
OpenBenchmarking.orgMB/s, More Is BetterThreaded I/O Tester 0.3.364MB Read - 32 ThreadsSHORTYDL203K6K9K12K15KMin: 18725.43 / Avg: 18742.18 / Max: 18761.11Min: 18951.56 / Avg: 18975.76 / Max: 19007.14

OpenBenchmarking.orgMB/s, More Is BetterThreaded I/O Tester 0.3.364MB Write - 32 ThreadsSHORTYDL203691215SE +/- 0.25, N = 6SE +/- 0.05, N = 310.113.42
OpenBenchmarking.orgMB/s, More Is BetterThreaded I/O Tester 0.3.364MB Write - 32 ThreadsSHORTYDL203691215Min: 9.37 / Avg: 10.11 / Max: 11.28Min: 3.36 / Avg: 3.42 / Max: 3.52

PostMark

This is a test of NetApp's PostMark benchmark designed to simulate small-file testing similar to the tasks endured by web and mail servers. This test profile will set PostMark to perform 25,000 transactions with 500 files simultaneously with the file sizes ranging between 5 and 512 kilobytes. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgTPS, More Is BetterPostMark 1.51Disk Transaction PerformanceSHORTYDL2014002800420056007000SE +/- 56.00, N = 3SE +/- 56.00, N = 3652264661. (CC) gcc options: -O3
OpenBenchmarking.orgTPS, More Is BetterPostMark 1.51Disk Transaction PerformanceSHORTYDL2011002200330044005500Min: 6410 / Avg: 6522 / Max: 6578Min: 6410 / Avg: 6466 / Max: 65781. (CC) gcc options: -O3

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database SearchSHORTYDL203691215SE +/- 0.07, N = 3SE +/- 0.01, N = 311.1111.011. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database SearchSHORTYDL203691215Min: 11.03 / Avg: 11.11 / Max: 11.24Min: 11 / Avg: 11.01 / Max: 11.021. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence AlignmentSHORTYDL20246810SE +/- 0.02, N = 3SE +/- 0.00, N = 36.276.251. (CC) gcc options: -O3 -lm -lpthread
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence AlignmentSHORTYDL203691215Min: 6.23 / Avg: 6.27 / Max: 6.3Min: 6.25 / Avg: 6.25 / Max: 6.261. (CC) gcc options: -O3 -lm -lpthread

GMPbench

OpenBenchmarking.orgGMPbench Score, More Is BetterGMPbench 0.2Total TimeSHORTYDL2090018002700360045004377.004355.601. (CC) gcc options: -O3 -fomit-frame-pointer -lm

GraphicsMagick

This is a test of GraphicsMagick with its OpenMP implementation that performs various imaging tests to stress the system's CPU. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgIterations Per Minute, More Is BetterGraphicsMagick 1.3.19HWB Color SpaceSHORTYDL204080120160200SE +/- 0.33, N = 3SE +/- 0.00, N = 31851851. (CC) gcc options: -std=gnu99 -fopenmp -O2 -pthread -ljpeg -lbz2 -lxml2 -lz -lm -lgomp -lpthread
OpenBenchmarking.orgIterations Per Minute, More Is BetterGraphicsMagick 1.3.19HWB Color SpaceSHORTYDL20306090120150Min: 185 / Avg: 185.33 / Max: 186Min: 185 / Avg: 185 / Max: 1851. (CC) gcc options: -std=gnu99 -fopenmp -O2 -pthread -ljpeg -lbz2 -lxml2 -lz -lm -lgomp -lpthread

OpenBenchmarking.orgIterations Per Minute, More Is BetterGraphicsMagick 1.3.19Local Adaptive ThresholdingSHORTYDL2020406080100SE +/- 0.00, N = 3SE +/- 0.00, N = 394931. (CC) gcc options: -std=gnu99 -fopenmp -O2 -pthread -ljpeg -lbz2 -lxml2 -lz -lm -lgomp -lpthread
OpenBenchmarking.orgIterations Per Minute, More Is BetterGraphicsMagick 1.3.19Local Adaptive ThresholdingSHORTYDL2020406080100Min: 94 / Avg: 94 / Max: 94Min: 93 / Avg: 93 / Max: 931. (CC) gcc options: -std=gnu99 -fopenmp -O2 -pthread -ljpeg -lbz2 -lxml2 -lz -lm -lgomp -lpthread

C-Ray

This is a test of C-Ray, a simple raytracer designed to test the floating-point CPU performance. This test is multi-threaded (16 threads per core), will shoot 8 rays per pixel for anti-aliasing, and will generate a 1600 x 1200 image. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterC-Ray 1.1Total TimeSHORTYDL20612182430SE +/- 0.01, N = 3SE +/- 0.00, N = 323.3323.431. (CC) gcc options: -lm -lpthread -O3
OpenBenchmarking.orgSeconds, Fewer Is BetterC-Ray 1.1Total TimeSHORTYDL20510152025Min: 23.32 / Avg: 23.33 / Max: 23.33Min: 23.43 / Avg: 23.43 / Max: 23.441. (CC) gcc options: -lm -lpthread -O3

Parallel BZIP2 Compression

This test measures the time needed to compress a file (a .tar package of the Linux kernel source code) using BZIP2 compression. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterParallel BZIP2 Compression 1.1.12256MB File CompressionSHORTYDL203691215SE +/- 0.00, N = 3SE +/- 0.01, N = 312.4112.501. (CXX) g++ options: -O2 -pthread -lbz2 -lpthread
OpenBenchmarking.orgSeconds, Fewer Is BetterParallel BZIP2 Compression 1.1.12256MB File CompressionSHORTYDL2048121620Min: 12.41 / Avg: 12.41 / Max: 12.42Min: 12.48 / Avg: 12.5 / Max: 12.521. (CXX) g++ options: -O2 -pthread -lbz2 -lpthread

LZMA Compression

This test measures the time needed to compress a file using LZMA compression. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterLZMA Compression256MB File CompressionSHORTYDL2060120180240300SE +/- 0.11, N = 3SE +/- 0.11, N = 3267.24267.941. (CXX) g++ options: -O2
OpenBenchmarking.orgSeconds, Fewer Is BetterLZMA Compression256MB File CompressionSHORTYDL2050100150200250Min: 267.02 / Avg: 267.24 / Max: 267.37Min: 267.74 / Avg: 267.94 / Max: 268.121. (CXX) g++ options: -O2

Crafty

OpenBenchmarking.orgSeconds, Fewer Is BetterCrafty 23.4Elapsed TimeSHORTYDL201632486480SE +/- 0.04, N = 3SE +/- 0.09, N = 370.3070.741. (CC) gcc options: -lstdc++ -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterCrafty 23.4Elapsed TimeSHORTYDL201428425670Min: 70.25 / Avg: 70.3 / Max: 70.37Min: 70.61 / Avg: 70.74 / Max: 70.921. (CC) gcc options: -lstdc++ -lm

dcraw

This test times how long it takes to convert several high-resolution RAW NEF image files to PPM image format using dcraw. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterdcrawRAW To PPM Image ConversionSHORTYDL201122334455SE +/- 0.01, N = 3SE +/- 0.01, N = 346.5446.771. (CC) gcc options: -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterdcrawRAW To PPM Image ConversionSHORTYDL201020304050Min: 46.53 / Avg: 46.54 / Max: 46.54Min: 46.76 / Avg: 46.77 / Max: 46.781. (CC) gcc options: -lm

LAME MP3 Encoding

LAME is an MP3 encoder licensed under the LGPL. This test measures the time required to encode a WAV file to MP3 format. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterLAME MP3 Encoding 3.99.3WAV To MP3SHORTYDL2048121620SE +/- 0.00, N = 5SE +/- 0.00, N = 513.6413.711. (CC) gcc options: -O3 -fomit-frame-pointer -ffast-math -pipe -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterLAME MP3 Encoding 3.99.3WAV To MP3SHORTYDL2048121620Min: 13.64 / Avg: 13.64 / Max: 13.65Min: 13.7 / Avg: 13.71 / Max: 13.711. (CC) gcc options: -O3 -fomit-frame-pointer -ffast-math -pipe -lm

FFmpeg

OpenBenchmarking.orgSeconds, Fewer Is BetterFFmpeg 2.8.1H.264 HD To NTSC DVSHORTYDL203691215SE +/- 0.02, N = 3SE +/- 0.02, N = 311.359.821. (CC) gcc options: -lavdevice -lavfilter -lavformat -lavcodec -lswresample -lswscale -lavutil -lm -lbz2 -pthread -std=c99 -fomit-frame-pointer -O3 -fno-math-errno -fno-signed-zeros -fno-tree-vectorize
OpenBenchmarking.orgSeconds, Fewer Is BetterFFmpeg 2.8.1H.264 HD To NTSC DVSHORTYDL203691215Min: 11.31 / Avg: 11.35 / Max: 11.39Min: 9.78 / Avg: 9.82 / Max: 9.851. (CC) gcc options: -lavdevice -lavfilter -lavformat -lavcodec -lswresample -lswscale -lavutil -lm -lbz2 -pthread -std=c99 -fomit-frame-pointer -O3 -fno-math-errno -fno-signed-zeros -fno-tree-vectorize

GnuPG

OpenBenchmarking.orgSeconds, Fewer Is BetterGnuPG 1.4.101GB File EncryptionSHORTYDL20246810SE +/- 0.01, N = 4SE +/- 0.00, N = 47.497.501. (CC) gcc options: -O2 -MT -MD -MP -MF
OpenBenchmarking.orgSeconds, Fewer Is BetterGnuPG 1.4.101GB File EncryptionSHORTYDL203691215Min: 7.47 / Avg: 7.49 / Max: 7.51Min: 7.49 / Avg: 7.5 / Max: 7.511. (CC) gcc options: -O2 -MT -MD -MP -MF

Minion

OpenBenchmarking.orgSeconds, Fewer Is BetterMinion 0.15SolitaireSHORTYDL201530456075SE +/- 0.06, N = 3SE +/- 0.13, N = 368.7568.641. (CXX) g++ options: -O3 -fomit-frame-pointer -rdynamic -lboost_iostreams -lz -lbz2
OpenBenchmarking.orgSeconds, Fewer Is BetterMinion 0.15SolitaireSHORTYDL201326395265Min: 68.64 / Avg: 68.75 / Max: 68.83Min: 68.41 / Avg: 68.64 / Max: 68.861. (CXX) g++ options: -O3 -fomit-frame-pointer -rdynamic -lboost_iostreams -lz -lbz2

Open FMM Nero2D

OpenBenchmarking.orgSeconds, Fewer Is BetterOpen FMM Nero2D 2.0.2Total TimeSHORTYDL20110220330440550491.65494.681. (CXX) g++ options: -O2 -lfftw3 -llapack -lblas -lgfortran -lquadmath -lm

Sudokut

This is a test of Sudokut, which is a Sudoku puzzle solver written in Tcl. This test measures how long it takes to solve 100 Sudoku puzzles. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterSudokut 0.4Total TimeSHORTYDL203691215SE +/- 0.01, N = 3SE +/- 0.00, N = 313.2213.03
OpenBenchmarking.orgSeconds, Fewer Is BetterSudokut 0.4Total TimeSHORTYDL2048121620Min: 13.2 / Avg: 13.22 / Max: 13.24Min: 13.02 / Avg: 13.03 / Max: 13.03

Tachyon

This is a test of the threaded Tachyon, a parallel ray-tracing system. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTachyon 0.98.9Total TimeSHORTYDL2048121620SE +/- 0.00, N = 3SE +/- 0.01, N = 314.3814.441. (CC) gcc options: -m32 -O3 -fomit-frame-pointer -ffast-math -ltachyon -lm -lpthread
OpenBenchmarking.orgSeconds, Fewer Is BetterTachyon 0.98.9Total TimeSHORTYDL2048121620Min: 14.37 / Avg: 14.38 / Max: 14.38Min: 14.43 / Avg: 14.44 / Max: 14.461. (CC) gcc options: -m32 -O3 -fomit-frame-pointer -ffast-math -ltachyon -lm -lpthread

OpenSSL

OpenSSL is an open-source toolkit that implements SSL (Secure Sockets Layer) and TLS (Transport Layer Security) protocols. This test measures the RSA 4096-bit performance of OpenSSL. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSigns Per Second, More Is BetterOpenSSL 1.0.1gRSA 4096-bit PerformanceSHORTYDL20120240360480600SE +/- 0.74, N = 3SE +/- 2.06, N = 3563.80559.501. (CC) gcc options: -m64 -O3 -lssl -lcrypto -ldl
OpenBenchmarking.orgSigns Per Second, More Is BetterOpenSSL 1.0.1gRSA 4096-bit PerformanceSHORTYDL20100200300400500Min: 562.7 / Avg: 563.8 / Max: 565.2Min: 555.4 / Avg: 559.5 / Max: 561.81. (CC) gcc options: -m64 -O3 -lssl -lcrypto -ldl

PyBench

OpenBenchmarking.orgMilliseconds, Fewer Is BetterPyBench 2008-08-14Total For Average Test TimesSHORTYDL2030060090012001500SE +/- 2.31, N = 3SE +/- 0.58, N = 313821383
OpenBenchmarking.orgMilliseconds, Fewer Is BetterPyBench 2008-08-14Total For Average Test TimesSHORTYDL202004006008001000Min: 1378 / Avg: 1382 / Max: 1386Min: 1382 / Avg: 1383 / Max: 1384

Apache Benchmark

This is a test of ab, which is the Apache benchmark program. This test profile measures how many requests per second a given system can sustain when carrying out 1,000,000 requests with 100 requests being carried out concurrently. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgRequests Per Second, More Is BetterApache Benchmark 2.4.7Static Web Page ServingSHORTYDL2010K20K30K40K50KSE +/- 287.31, N = 3SE +/- 696.59, N = 345762.0345464.441. (CC) gcc options: -shared -fPIC -O2 -pthread
OpenBenchmarking.orgRequests Per Second, More Is BetterApache Benchmark 2.4.7Static Web Page ServingSHORTYDL208K16K24K32K40KMin: 45259.11 / Avg: 45762.03 / Max: 46254.19Min: 44161.28 / Avg: 45464.44 / Max: 46542.681. (CC) gcc options: -shared -fPIC -O2 -pthread

Sunflow Rendering System

OpenBenchmarking.orgSeconds, Fewer Is BetterSunflow Rendering System 0.07.2Global Illumination + Image SynthesisSHORTYDL200.7651.532.2953.063.825SE +/- 0.00, N = 2SE +/- 0.02, N = 23.373.40
OpenBenchmarking.orgSeconds, Fewer Is BetterSunflow Rendering System 0.07.2Global Illumination + Image SynthesisSHORTYDL20246810Min: 3.37 / Avg: 3.37 / Max: 3.37Min: 3.38 / Avg: 3.4 / Max: 3.43