test-pc-nathan

Running pts/hmmer-1.1.0, pts/mafft-1.4.0, pts/john-the-ripper-1.5.1, pts/himeno-1.1.0, pts/c-ray-1.1.0, pts/openssl-1.9.0 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1506224-BE-1506222SO03
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Bioinformatics 3 Tests
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nath-pc
June 22 2015
 
test-pc-philF
June 23 2015
 
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test-pc-nathanProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkMonitorOSKernelDesktopDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen Resolutionnath-pctest-pc-philFIntel Pentium 4 @ 3.00GHz (2 Cores)ASUS P5P800-SEIntel 82865G/PE/P + ICH5/ICH5R3072MB250GB SAMSUNG HD252HJ + 160GB Seagate ST3160815ASASUS NVIDIA GeForce 6200Intel 82801EB/ERIntel 82540EM GigabitLinuxMint 173.13.0-24-generic (x86_64)Cinnamon 2.4.1X Server 1.15.1NVIDIA 173.14.392.1.2GCC 4.8ext31280x1024Intel Core 2 Duo E8400 @ 3.00GHz (2 Cores)ASUS P5QL-EIntel 4 DRAM + ICH10R8192MB1000GB Western Digital WD10EARX-00N + 120GB Crucial_CT120M50 + 1000GB Western Digital WD10EADS-00L + 500GB SAMSUNG HD502HJ + 3001GB Western Digital WD30EFRX-68EGigabyte NVIDIA GeForce 9600 GT 512MB (500/499MHz)Intel 82801JIo.disp4.1_24wQualcomm Atheros AR8121/AR8113/AR8114Ubuntu 14.043.16.0-41-generic (x86_64)Cinnamon 2.4.5nouveau 1.0.103.3 Mesa 10.1.3 Gallium 0.4GCC 4.8.4ext41920x1200OpenBenchmarking.orgCompiler Details- nath-pc: --build=x86_64-linux-gnu --disable-browser-plugin --disable-libmudflap --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-multilib-list=m32,m64,mx32 --with-tune=generic -v - test-pc-philF: --build=x86_64-linux-gnu --disable-browser-plugin --disable-libmudflap --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-multilib-list=m32,m64,mx32 --with-tune=generic -v Processor Details- Scaling Governor: acpi-cpufreq ondemand

nath-pc vs. test-pc-philF ComparisonPhoronix Test SuiteBaseline+80.8%+80.8%+161.6%+161.6%+242.4%+242.4%323%281.4%215.3%175.8%152.6%92.5%R.4.b.PTotal TimeM.S.AP.D.SBlowfishP.P.SOpenSSLC-RayTimed MAFFT AlignmentTimed HMMer SearchJohn The RipperHimeno Benchmarknath-pctest-pc-philF

test-pc-nathanhmmer: Pfam Database Searchmafft: Multiple Sequence Alignmentjohn-the-ripper: Blowfishhimeno: Poisson Pressure Solverc-ray: Total Timeopenssl: RSA 4096-bit Performancenath-pctest-pc-philF111.7967.16585553.00314.0328.4040.5421.3014781064.6582.34120.13OpenBenchmarking.org

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchnath-pctest-pc-philF306090120150SE +/- 0.93, N = 3SE +/- 0.23, N = 3111.7940.541. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchnath-pctest-pc-philF20406080100Min: 110.2 / Avg: 111.79 / Max: 113.44Min: 40.16 / Avg: 40.54 / Max: 40.951. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignmentnath-pctest-pc-philF1530456075SE +/- 0.06, N = 3SE +/- 0.19, N = 367.1621.301. (CC) gcc options: -O3 -lm -lpthread
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignmentnath-pctest-pc-philF1326395265Min: 67.05 / Avg: 67.16 / Max: 67.24Min: 21.1 / Avg: 21.3 / Max: 21.681. (CC) gcc options: -O3 -lm -lpthread

John The Ripper

This is a benchmark of John The Ripper, which is a password cracker. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgReal C/S, More Is BetterJohn The Ripper 1.8.0Test: Blowfishnath-pctest-pc-philF30060090012001500SE +/- 1.45, N = 3SE +/- 35.32, N = 658514781. (CC) gcc options: -fopenmp -lcrypt
OpenBenchmarking.orgReal C/S, More Is BetterJohn The Ripper 1.8.0Test: Blowfishnath-pctest-pc-philF30060090012001500Min: 583 / Avg: 585.33 / Max: 588Min: 1302 / Avg: 1478.17 / Max: 15201. (CC) gcc options: -fopenmp -lcrypt

Himeno Benchmark

The Himeno benchmark is a linear solver of pressure Poisson using a point-Jacobi method. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure Solvernath-pctest-pc-philF2004006008001000SE +/- 0.38, N = 3SE +/- 1.52, N = 3553.001064.651. (CC) gcc options: -O3
OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure Solvernath-pctest-pc-philF2004006008001000Min: 552.24 / Avg: 553 / Max: 553.44Min: 1062 / Avg: 1064.65 / Max: 1067.281. (CC) gcc options: -O3

C-Ray

This is a test of C-Ray, a simple raytracer designed to test the floating-point CPU performance. This test is multi-threaded (16 threads per core), will shoot 8 rays per pixel for anti-aliasing, and will generate a 1600 x 1200 image. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterC-Ray 1.1Total Timenath-pctest-pc-philF70140210280350SE +/- 4.47, N = 3SE +/- 0.17, N = 3314.0382.341. (CC) gcc options: -lm -lpthread -O3
OpenBenchmarking.orgSeconds, Fewer Is BetterC-Ray 1.1Total Timenath-pctest-pc-philF60120180240300Min: 308.52 / Avg: 314.03 / Max: 322.88Min: 82.07 / Avg: 82.34 / Max: 82.641. (CC) gcc options: -lm -lpthread -O3

OpenSSL

OpenSSL is an open-source toolkit that implements SSL (Secure Sockets Layer) and TLS (Transport Layer Security) protocols. This test measures the RSA 4096-bit performance of OpenSSL. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSigns Per Second, More Is BetterOpenSSL 1.0.1gRSA 4096-bit Performancenath-pctest-pc-philF306090120150SE +/- 0.00, N = 3SE +/- 1.88, N = 428.40120.131. (CC) gcc options: -m64 -O3 -lssl -lcrypto -ldl
OpenBenchmarking.orgSigns Per Second, More Is BetterOpenSSL 1.0.1gRSA 4096-bit Performancenath-pctest-pc-philF20406080100Min: 28.4 / Avg: 28.4 / Max: 28.4Min: 115.3 / Avg: 120.13 / Max: 123.11. (CC) gcc options: -m64 -O3 -lssl -lcrypto -ldl