bioUbu

BioUbu1410

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1501039-LI-BIOUBU66519
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bioUbu
January 03 2015
 
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bioUbuOpenBenchmarking.orgPhoronix Test Suite2 x Intel Core i7-3770 @ 3.40GHz (2 Cores)Intel 440BXIntel 440BX/ZX/DX4096MB21GB VMware Virtual SVMware SVGA IIEnsoniq ES1371 / CreativeIntel 82545EM GigabitUbuntu 14.103.16.0-28-generic (x86_64)GNOME 3.9.90X Server 1.16.0vmware 13.0.22.1 Mesa 10.3.0 Gallium 0.4GCC 4.9.1ext41680x1050VMwareProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen ResolutionSystem LayerBioUbu BenchmarksSystem Logs- --build=x86_64-linux-gnu --disable-browser-plugin --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-multilib-list=m32,m64,mx32 --with-tune=generic -v

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database SearchbioUbu612182430SE +/- 0.11, N = 323.871. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence AlignmentbioUbu48121620SE +/- 2.05, N = 616.251. (CC) gcc options: -O3 -lm -lpthread

Timed MrBayes Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny AnalysisbioUbu918273645SE +/- 0.30, N = 341.43