scspr0012602001

Running pts/hmmer-1.1.0, pts/mafft-1.4.0, pts/mrbayes-1.2.0 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1408201-KH-1408201KH92
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Bioinformatics 3 Tests
C/C++ Compiler Tests 3 Tests
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HPC - High Performance Computing 3 Tests
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scspr0012602001
August 20 2014
 
sti-rh64-2273
August 20 2014
 
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scspr0012602001

Processor: Intel Xeon E5-2680 0 @ 2.70GHz (1 Core), Motherboard: Microsoft Virtual Machine v7.0, Chipset: Intel 440BX/ZX/DX, Memory: 3968 MB + 128 MB, Disk: 21GB Virtual Disk, Graphics: Microsoft Hyper-V virtual VGA

OS: RedHatEnterpriseServer 6.5, Kernel: 2.6.32-431.3.1.el6.x86_64 (x86_64), Compiler: GCC 4.4.7 20120313, File-System: /root/.phoronix-test-suite/installed-tests/: Name: . Size: 4096 Perms: 0755/drwxr-xr-x Type: Directory Blocks: 8 User: 0/root Inode: 1054904 IOsize: 4096 : 0/root Access Time: Wed Aug 20 11:54:38 2014 Links: 3 Modify Time: Wed Aug 20 11:54:38 2014 FS device: 64769 Change Time: Wed Aug 20 11:54:38 2014 Maj/Min: 0/0, Screen Resolution: 1152x864, System Layer: Microsoft Hyper-V Server

Compiler Notes: --build=x86_64-redhat-linux --disable-dssi --disable-libjava-multilib --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-unique-object --enable-java-awt=gtk --enable-java-maintainer-mode --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-libgcj-multifile --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=i686 --with-cloog --with-ppl --with-tune=generic

sti-rh64-2273

Processor: Intel Xeon E7- 2850 @ 2.00GHz (1 Core), Motherboard: Intel 440BX, Chipset: Intel 440BX/ZX/DX, Memory: 1 x 4096 MB DRAM, Disk: 21GB Virtual disk, Graphics: VMware SVGA II, Network: VMware VMXNET3

OS: Red Hat Enterprise Linux Server 6.4, Kernel: 2.6.32-358.23.2.el6.x86_64 (x86_64), Compiler: GCC 4.2.1, File-System: ext4, System Layer: VMware

Compiler Notes: --enable-languages=c,c++,fortran,java --with-mpfr-include=/u/ssubrama/tgb/build/x86_64-redhat-rhel6/gcc-4.2.1-build/../gcc-4.2.1/mpfr

scspr0012602001ProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelCompilerFile-SystemScreen ResolutionSystem Layerscspr0012602001sti-rh64-2273Intel Xeon E5-2680 0 @ 2.70GHz (1 Core)Microsoft Virtual Machine v7.0Intel 440BX/ZX/DX3968 MB + 128 MB21GB Virtual DiskMicrosoft Hyper-V virtual VGARedHatEnterpriseServer 6.52.6.32-431.3.1.el6.x86_64 (x86_64)GCC 4.4.7 20120313/root/.phoronix-test-suite/installed-tests/: Name: . Size: 4096 Perms: 0755/drwxr-xr-x Type: Directory Blocks: 8 User: 0/root Inode: 1054904 IOsize: 4096 : 0/root Access Time: Wed Aug 20 11:54:38 2014 Links: 3 Modify Time: Wed Aug 20 11:54:38 2014 FS device: 64769 Change Time: Wed Aug 20 11:54:38 2014 Maj/Min: 0/01152x864Microsoft Hyper-V ServerIntel Xeon E7- 2850 @ 2.00GHz (1 Core)Intel 440BX1 x 4096 MB DRAM21GB Virtual diskVMware SVGA IIVMware VMXNET3Red Hat Enterprise Linux Server 6.42.6.32-358.23.2.el6.x86_64 (x86_64)GCC 4.2.1ext4VMwareOpenBenchmarking.orgCompiler Details- scspr0012602001: --build=x86_64-redhat-linux --disable-dssi --disable-libjava-multilib --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-unique-object --enable-java-awt=gtk --enable-java-maintainer-mode --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-libgcj-multifile --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=i686 --with-cloog --with-ppl --with-tune=generic- sti-rh64-2273: --enable-languages=c,c++,fortran,java --with-mpfr-include=/u/ssubrama/tgb/build/x86_64-redhat-rhel6/gcc-4.2.1-build/../gcc-4.2.1/mpfr

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchscspr0012602001sti-rh64-2273306090120150SE +/- 0.09, N = 3SE +/- 0.48, N = 364.18144.841. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchscspr0012602001sti-rh64-2273306090120150Min: 64.01 / Avg: 64.18 / Max: 64.31Min: 144.09 / Avg: 144.84 / Max: 145.731. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignmentscspr0012602001sti-rh64-22731122334455SE +/- 0.07, N = 3SE +/- 0.18, N = 325.9147.221. (CC) gcc options: -O3 -lm -lpthread
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignmentscspr0012602001sti-rh64-22731020304050Min: 25.82 / Avg: 25.91 / Max: 26.05Min: 46.98 / Avg: 47.22 / Max: 47.561. (CC) gcc options: -O3 -lm -lpthread

Timed MrBayes Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny Analysisscspr00126020011530456075SE +/- 0.21, N = 365.79

scspr0012602001

Processor: Intel Xeon E5-2680 0 @ 2.70GHz (1 Core), Motherboard: Microsoft Virtual Machine v7.0, Chipset: Intel 440BX/ZX/DX, Memory: 3968 MB + 128 MB, Disk: 21GB Virtual Disk, Graphics: Microsoft Hyper-V virtual VGA

OS: RedHatEnterpriseServer 6.5, Kernel: 2.6.32-431.3.1.el6.x86_64 (x86_64), Compiler: GCC 4.4.7 20120313, File-System: /root/.phoronix-test-suite/installed-tests/: Name: . Size: 4096 Perms: 0755/drwxr-xr-x Type: Directory Blocks: 8 User: 0/root Inode: 1054904 IOsize: 4096 : 0/root Access Time: Wed Aug 20 11:54:38 2014 Links: 3 Modify Time: Wed Aug 20 11:54:38 2014 FS device: 64769 Change Time: Wed Aug 20 11:54:38 2014 Maj/Min: 0/0, Screen Resolution: 1152x864, System Layer: Microsoft Hyper-V Server

Compiler Notes: --build=x86_64-redhat-linux --disable-dssi --disable-libjava-multilib --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-unique-object --enable-java-awt=gtk --enable-java-maintainer-mode --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-libgcj-multifile --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=i686 --with-cloog --with-ppl --with-tune=generic

Testing initiated at 20 August 2014 12:24 by user root.

sti-rh64-2273

Processor: Intel Xeon E7- 2850 @ 2.00GHz (1 Core), Motherboard: Intel 440BX, Chipset: Intel 440BX/ZX/DX, Memory: 1 x 4096 MB DRAM, Disk: 21GB Virtual disk, Graphics: VMware SVGA II, Network: VMware VMXNET3

OS: Red Hat Enterprise Linux Server 6.4, Kernel: 2.6.32-358.23.2.el6.x86_64 (x86_64), Compiler: GCC 4.2.1, File-System: ext4, System Layer: VMware

Compiler Notes: --enable-languages=c,c++,fortran,java --with-mpfr-include=/u/ssubrama/tgb/build/x86_64-redhat-rhel6/gcc-4.2.1-build/../gcc-4.2.1/mpfr

Testing initiated at 20 August 2014 12:41 by user root.