comp_bio.txt

Intel Core i7-4770K testing with a Gigabyte H87M-D3H and NVIDIA GeForce GTX 770 4096MB on Ubuntu 14.10 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1406225-SO-COMPBIOTX27
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Comp_bio
June 22 2014
 
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comp_bio.txtOpenBenchmarking.orgPhoronix Test SuiteIntel Core i7-4770K @ 3.50GHz (8 Cores)Gigabyte H87M-D3HIntel 4th Gen Core DRAM16384MB1000GB TOSHIBA DT01ACA1NVIDIA GeForce GTX 770 4096MB (540/3505MHz)Intel 8 /C220Realtek RTL8111/8168/8411Ubuntu 14.103.15.0-6-generic (i686)Unity 7.3.0X Server 1.15.1GCC 4.8ext43840x2160ProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelDesktopDisplay ServerCompilerFile-SystemScreen ResolutionComp_bio.txt BenchmarksSystem Logs- --build=i686-linux-gnu --disable-browser-plugin --disable-libmudflap --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-targets=all --enable-threads=posix --host=i686-linux-gnu --target=i686-linux-gnu --with-arch-32=i686 --with-arch-directory=i386 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-i386/jre --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-i386 --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-i386 --with-multilib-list=m32,m64,mx32 --with-tune=generic -v - Scaling Governor: acpi-cpufreq ondemand

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database SearchComp_bio3691215SE +/- 0.01, N = 312.431. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence AlignmentComp_bio246810SE +/- 0.33, N = 68.711. (CC) gcc options: -O3 -lm -lpthread

Timed MrBayes Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny AnalysisComp_bio918273645SE +/- 1.71, N = 637.53