256 Core AMD Opteron, 1 Terabyte RAM

Tests by Michael Larabel on PTS.

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256 Core AMD + 1TB RAM
December 02 2013
 
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256 Core AMD + 1TB RAM

Processor: 32 x AMD Opteron 6380 @ 2.50GHz (256 Cores), Motherboard: Supermicro H8QGL, Chipset: AMD ATI RD890 + SB7x0/SB8x0/SB9x0, Memory: 1032192MB, Disk: 2 x 256GB Samsung SSD 840 + 2000GB Seagate ST2000DM001-1CH1, Graphics: Matrox s MGA G200eW WPCM450, Network: Intel 82576 Gigabit Connection

OS: CentOS 6.4, Kernel: 3.10.10-advanced+ (x86_64), Compiler: GCC 4.4.7 20120313 + Open64 4.5.2.1 + PGI C-C++ Workstation, File-System: nfs

Compiler Notes: --build=x86_64-redhat-linux --disable-dssi --disable-libjava-multilib --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-unique-object --enable-java-awt=gtk --enable-java-maintainer-mode --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-libgcj-multifile --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=i686 --with-cloog --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --with-ppl --with-tune=generic
System Notes: SELinux: Enabled.

256 Core AMD Opteron, 1 Terabyte RAMOpenBenchmarking.orgPhoronix Test Suite32 x AMD Opteron 6380 @ 2.50GHz (256 Cores)Supermicro H8QGLAMD ATI RD890 + SB7x0/SB8x0/SB9x01032192MB2 x 256GB Samsung SSD 840 + 2000GB Seagate ST2000DM001-1CH1Matrox s MGA G200eW WPCM450Intel 82576 Gigabit ConnectionCentOS 6.43.10.10-advanced+ (x86_64)GCC 4.4.7 20120313 + Open64 4.5.2.1 + PGI C-C++ WorkstationnfsProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelCompilerFile-System256 Core AMD Opteron, 1 Terabyte RAM BenchmarksSystem Logs- --build=x86_64-redhat-linux --disable-dssi --disable-libjava-multilib --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-unique-object --enable-java-awt=gtk --enable-java-maintainer-mode --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-libgcj-multifile --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=i686 --with-cloog --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --with-ppl --with-tune=generic - SELinux: Enabled.

256 Core AMD Opteron, 1 Terabyte RAMdolfyn: Computational Fluid Dynamicsffte: N=64, 1D Complex FFT Routinehmmer: Pfam Database Searchmafft: Multiple Sequence Alignmenthimeno: Poisson Pressure Solver256 Core AMD + 1TB RAM57.742139.3327.7946.41418.39OpenBenchmarking.org

Dolfyn

Dolfyn is a Computational Fluid Dynamics (CFD) code of modern numerical simulation techniques. The Dolfyn test profile measures the execution time of the bundled computational fluid dynamics demos that are bundled with Dolfyn. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterDolfyn 0.527Computational Fluid Dynamics256 Core AMD + 1TB RAM1326395265SE +/- 0.06, N = 357.74

FFTE

FFTE is a package by Daisuke Takahashi to compute Discrete Fourier Transforms of 1-, 2- and 3- dimensional sequences of length (2^p)*(3^q)*(5^r). Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterFFTE 5.0Test: N=64, 1D Complex FFT Routine256 Core AMD + 1TB RAM5001000150020002500SE +/- 31.51, N = 62139.331. (F9X) gfortran options: -O3 -fomit-frame-pointer -fopenmp -pthread -lmpi_f90 -lmpi_f77 -lmpi -ldl -lm -lnuma -lrt -lnsl -lutil

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Search256 Core AMD + 1TB RAM714212835SE +/- 3.41, N = 627.791. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignment256 Core AMD + 1TB RAM1122334455SE +/- 2.39, N = 646.411. (CC) gcc options: -O3 -lm -lpthread

Himeno Benchmark

The Himeno benchmark is a linear solver of pressure Poisson using a point-Jacobi method. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure Solver256 Core AMD + 1TB RAM90180270360450SE +/- 0.77, N = 3418.391. (CC) gcc options: -O3

256 Core AMD + 1TB RAM

Processor: 32 x AMD Opteron 6380 @ 2.50GHz (256 Cores), Motherboard: Supermicro H8QGL, Chipset: AMD ATI RD890 + SB7x0/SB8x0/SB9x0, Memory: 1032192MB, Disk: 2 x 256GB Samsung SSD 840 + 2000GB Seagate ST2000DM001-1CH1, Graphics: Matrox s MGA G200eW WPCM450, Network: Intel 82576 Gigabit Connection

OS: CentOS 6.4, Kernel: 3.10.10-advanced+ (x86_64), Compiler: GCC 4.4.7 20120313 + Open64 4.5.2.1 + PGI C-C++ Workstation, File-System: nfs

Compiler Notes: --build=x86_64-redhat-linux --disable-dssi --disable-libjava-multilib --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-unique-object --enable-java-awt=gtk --enable-java-maintainer-mode --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-libgcj-multifile --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=i686 --with-cloog --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --with-ppl --with-tune=generic
System Notes: SELinux: Enabled.

Testing initiated at 2 December 2013 03:57 by user .