nb_compbio2

VirtualBox 4.2.18 testing on Ubuntu 13.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1311261-RA-NBCOMPBIO22
Jump To Table - Results

Statistics

Remove Outliers Before Calculating Averages

Graph Settings

Prefer Vertical Bar Graphs

Table

Show Detailed System Result Table

Run Management

Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
AMD FX-8320 Eight-Core
November 26 2013
 
Only show results matching title/arguments (delimit multiple options with a comma):
Do not show results matching title/arguments (delimit multiple options with a comma):


nb_compbio2OpenBenchmarking.orgPhoronix Test SuiteAMD FX-8320 Eight-Core @ 3.48GHz (8 Cores)Oracle VirtualBox v1.2Intel 440FX- 82441FX PMC2560MB215GB VBOX HDDInnoTek VirtualBoxIntel 82801AA AC 97 AudioVBOX monitorIntel 82540EM GigabitUbuntu 13.043.8.0-33-generic (x86_64)X Server 1.13.3vboxvideo 1.0.1GCC 4.7ext4944x970VirtualBox 4.2.18ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDisplay ServerDisplay DriverCompilerFile-SystemScreen ResolutionSystem LayerNb_compbio2 BenchmarksSystem Logs- --build=x86_64-linux-gnu --disable-cloog-version-check --disable-ppl-version-check --disable-werror --enable-checking=release --enable-clocale=gnu --enable-cloog-backend=ppl --enable-gnu-unique-object --enable-languages=c,c++,go,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-cloog --with-multilib-list=m32,m64,mx32 --with-tune=generic -v

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database SearchAMD FX-8320 Eight-Core510152025SE +/- 0.33, N = 622.581. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence AlignmentAMD FX-8320 Eight-Core48121620SE +/- 0.24, N = 414.851. (CC) gcc options: -O3 -lm -lpthread

Timed MrBayes Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny AnalysisAMD FX-8320 Eight-Core1530456075SE +/- 0.03, N = 368.54