computational_biology

4 x Intel Xeon X7560 testing with a Dell 0P658H and Matrox s MGA G200eW WPCM450 on Ubuntu 12.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1309102-RAFD-130910694
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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
Intel Xeon X7560
September 11 2013
 
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computational_biologyOpenBenchmarking.orgPhoronix Test Suite4 x Intel Xeon X7560 @ 2.26GHz (64 Cores)Dell 0P658HIntel 5520/5500/X58 + ICH10258048MB215GB PERC H700 + 1689GB PERC H700 + 1690GB PERC H700Matrox s MGA G200eW WPCM450Broadcom NetXtreme II BCM5709 GigabitUbuntu 12.043.2.0-38-generic (x86_64)GCC 4.6 + Clang 3.0-6ubuntu3ext4640x480ProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelCompilerFile-SystemScreen ResolutionComputational_biology BenchmarksSystem Logs- --build=x86_64-linux-gnu --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-languages=c,c++,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-arch-32=i686 --with-tune=generic -v

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database SearchIntel Xeon X75603691215SE +/- 0.05, N = 312.481. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database SearchIntel Xeon X756048121620Min: 12.39 / Avg: 12.48 / Max: 12.581. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence AlignmentIntel Xeon X7560714212835SE +/- 0.56, N = 632.011. (CC) gcc options: -O3 -lm -lpthread