hmmer-001

4 x Intel Xeon E5-4650L 0 testing with a Dell 04K5X5 and Matrox G200eR2 on Gentoo Base 2.1 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1207049-BY-HMMER001839
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frist
July 04 2012
 


hmmer-001OpenBenchmarking.orgPhoronix Test Suite4 x Intel Xeon E5-4650L 0 @ 2.60GHz (64 Cores)Dell 04K5X5Intel Sandy DMI2516096MB146GB PERC H710P + 2 x 1979GB PERC H710P + 2 x 239GB PERC H710PMatrox G200eR2Intel I350 Gigabit ConnectionGentoo Base 2.13.3.8-gentoo (x86_64)GCC 4.5.3xfsProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelCompilerFile-SystemHmmer-001 BenchmarksSystem Logs- --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/4.5.3 --build=x86_64-pc-linux-gnu --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.5.3 --disable-altivec --disable-fixed-point --disable-libgcj --disable-libssp --disable-lto --disable-werror --enable-__cxa_atexit --enable-checking=release --enable-clocale=gnu --enable-languages=c,c++,fortran --enable-libgomp --enable-libmudflap --enable-multilib --enable-nls --enable-obsolete --enable-secureplt --enable-shared --enable-targets=all --enable-threads=posix --host=x86_64-pc-linux-gnu --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.3/include --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.5.3/man --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/4.5.3/python --without-cloog --without-ppl

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchfrist246810SE +/- 0.04, N = 38.421. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm