herschel-hmmer

AMD Opteron 6282 SE testing on FreeBSD via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1205218-BY-HERSCHELH62
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gcc42
May 21 2012
 
gcc47 march=k8
May 21 2012
 
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herschel-hmmerOpenBenchmarking.orgPhoronix Test SuiteAMD Opteron 6282 SE @ 2.60GHz (64 Cores)iXsystems AX4424-848A 1234567890524288MB10924GBFreeBSD9.0-RELEASE (x86_64)GCC 4.2.1 20070831 + Clang 3.0 (SVN 142614) + LLVM 3.0zfsProcessorMotherboardMemoryDiskOSKernelCompilerFile-SystemHerschel-hmmer BenchmarksSystem Logs

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchgcc42gcc47 march=k8510152025SE +/- 0.12, N = 3SE +/- 0.16, N = 321.2521.75
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchgcc42gcc47 march=k8510152025Min: 21 / Avg: 21.25 / Max: 21.39Min: 21.49 / Avg: 21.75 / Max: 22.05