hmmer_test

AMD FX-4100 testing with a Gigabyte GA-970A-D3 and NVIDIA GeForce 7600 GS 256MB on CentOS 6.2 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1204136-BY-HMMERTEST04
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Result
Identifier
Performance Per
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Date
Run
  Test
  Duration
hmmer_test
January 02 2011
 

hmmer_test

Processor: AMD FX-4100 @ 3.62GHz (4 Cores), Motherboard: Gigabyte GA-970A-D3, Chipset: ATI RD890, Memory: 2 x 4096 MB 1333MHz, Disk: 500GB Seagate ST500DM002-1BC14 + 40GB SAMSUNG HD040GJ/, Graphics: NVIDIA GeForce 7600 GS 256MB (400/405MHz), Audio: ATI SBx00 Azalia, Monitor: Acer AL1916W, Network: Realtek RTL8111/8168B

OS: CentOS 6.2, Kernel: 2.6.32-220.7.1.el6.x86_64 (x86_64), Desktop: GNOME 2.28.2, Display Server: X Server 1.10.4, Display Driver: nouveau 0.0.16, OpenGL: 2.1 Mesa 7.11, Compiler: GCC 4.4.6 20110731, File-System: ext4, Screen Resolution: 1440x900

Compiler Notes: --build=x86_64-redhat-linux --disable-dssi --disable-libjava-multilib --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-unique-object --enable-java-awt=gtk --enable-java-maintainer-mode --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-libgcj-multifile --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=i686 --with-cloog --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --with-ppl --with-tune=generic
System Notes: Firefox was running on this system. SELinux: Enabled.

hmmer_testOpenBenchmarking.orgPhoronix Test SuiteAMD FX-4100 @ 3.62GHz (4 Cores)Gigabyte GA-970A-D3ATI RD8902 x 4096 MB 1333MHz500GB Seagate ST500DM002-1BC14 + 40GB SAMSUNG HD040GJ/NVIDIA GeForce 7600 GS 256MB (400/405MHz)ATI SBx00 AzaliaAcer AL1916WRealtek RTL8111/8168BCentOS 6.22.6.32-220.7.1.el6.x86_64 (x86_64)GNOME 2.28.2X Server 1.10.4nouveau 0.0.162.1 Mesa 7.11GCC 4.4.6 20110731ext41440x900ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen ResolutionHmmer_test BenchmarksSystem Logs- --build=x86_64-redhat-linux --disable-dssi --disable-libjava-multilib --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-unique-object --enable-java-awt=gtk --enable-java-maintainer-mode --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-libgcj-multifile --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=i686 --with-cloog --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --with-ppl --with-tune=generic - Firefox was running on this system. SELinux: Enabled.

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchhmmer_test612182430SE +/- 0.49, N = 625.111. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

hmmer_test

Processor: AMD FX-4100 @ 3.62GHz (4 Cores), Motherboard: Gigabyte GA-970A-D3, Chipset: ATI RD890, Memory: 2 x 4096 MB 1333MHz, Disk: 500GB Seagate ST500DM002-1BC14 + 40GB SAMSUNG HD040GJ/, Graphics: NVIDIA GeForce 7600 GS 256MB (400/405MHz), Audio: ATI SBx00 Azalia, Monitor: Acer AL1916W, Network: Realtek RTL8111/8168B

OS: CentOS 6.2, Kernel: 2.6.32-220.7.1.el6.x86_64 (x86_64), Desktop: GNOME 2.28.2, Display Server: X Server 1.10.4, Display Driver: nouveau 0.0.16, OpenGL: 2.1 Mesa 7.11, Compiler: GCC 4.4.6 20110731, File-System: ext4, Screen Resolution: 1440x900

Compiler Notes: --build=x86_64-redhat-linux --disable-dssi --disable-libjava-multilib --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-unique-object --enable-java-awt=gtk --enable-java-maintainer-mode --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-libgcj-multifile --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=i686 --with-cloog --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --with-ppl --with-tune=generic
System Notes: Firefox was running on this system. SELinux: Enabled.

Testing initiated at 2 January 2011 05:41 by user .