2011-06-10-2226

Running pts/hmmer-1.1.0, pts/mafft-1.2.0, pts/mrbayes-1.2.0.

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2011-06-10 22:26
June 10 2011
 
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2011-06-10-2226OpenBenchmarking.orgPhoronix Test SuiteIntel Xeon E31270 @ 3.39GHz (8 Cores)ASUS P8B-MIntel Sandy Bridge8 x 4096 MB DDR3-1333MHz2000GB Seagate ST32000641ASASPEED ASPEED FamilySmart CableFedora release 14 (Laughlin)2.6.35.13-91.fc14.x86_64 (x86_64)vesa 2.3.0GCC 4.5.1ext4ProcessorMotherboardChipsetMemoryDiskGraphicsMonitorOSKernelDisplay DriverCompilerFile-System2011-06-10-2226 BenchmarksSystem Logs- .

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Search2011-06-10 22:263691215SE +/- 0.02, N = 312.32

Timed MAFFT Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.706Multiple Sequence Alignment2011-06-10 22:26510152025SE +/- 0.02, N = 321.36

Timed MrBayes Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny Analysis2011-06-10 22:26612182430SE +/- 0.04, N = 325.13