Timed 16 Structure runs 1.0.0

stunts/structure-1.0.0 - 30 August 2015 - First version of the STRUCTURE PTS profile.

downloads.xml

<?xml version="1.0"?>
<!--Phoronix Test Suite v5.8.0 (Belev)-->
<PhoronixTestSuite>
  <Downloads>
    <Package>
      <URL>http://pritchardlab.stanford.edu/structure_software/release_versions/v2.3.4/structure_kernel_source.tar.gz</URL>
      <MD5>4e0591678cdbfe79347d272b5dceeda1</MD5>
      <FileSize>66375</FileSize>
    </Package>
    <Package>
      <URL>https://raw.githubusercontent.com/StuntsPT/Structure_threader/master/PTS/data/Reduced_dataset.structure</URL>
      <MD5>1665111727e05d4ba3eea253a986c374</MD5>
      <FileSize>5317</FileSize>
    </Package>
    <Package>
      <URL>https://raw.githubusercontent.com/StuntsPT/Structure_threader/master/PTS/data/mainparams</URL>
      <MD5>4e41f743c66c3dcd926463a831ab1cda</MD5>
      <FileSize>2596</FileSize>
    </Package>
    <Package>
      <URL>https://raw.githubusercontent.com/StuntsPT/Structure_threader/master/PTS/data/extraparams</URL>
      <MD5>c4f5fe55b6a496b8c55a0538fcc173d7</MD5>
      <FileSize>6257</FileSize>
    </Package>
  </Downloads>
</PhoronixTestSuite>

install.sh

#!/bin/sh

tar -zxvf structure_kernel_source.tar.gz

cd structure_kernel_src
make
cd ..

echo "#!/bin/bash

for i in {1..4}
  do
      for j in {1..4}
        do
  ./structure_kernel_src/structure -i Reduced_dataset.structure -o output_K\${i}_R\${j} -K \${i} >> \$LOG_FILE 2>&1
        done
  done

" > structure
chmod +x structure

results-definition.xml

<?xml version="1.0"?>
<!--Phoronix Test Suite v5.8.0 (Belev)-->
<PhoronixTestSuite>
  <SystemMonitor>
    <Sensor>sys.time</Sensor>
  </SystemMonitor>
</PhoronixTestSuite>

test-definition.xml

<?xml version="1.0"?>
<!--Phoronix Test Suite v5.8.0 (Belev)-->
<PhoronixTestSuite>
  <TestInformation>
    <Title>Timed 16 Structure runs</Title>
    <AppVersion>2.3.4</AppVersion>
    <Description>Single threaded bayesian calculation of population attribution. Will calculate clusterings for 4 values of "K" with 4 replciates for each value of "K".</Description>
    <ResultScale>Seconds</ResultScale>
    <Proportion>LIB</Proportion>
    <SubTitle>Cork Oak clustering</SubTitle>
    <TimesToRun>3</TimesToRun>
  </TestInformation>
  <TestProfile>
    <Version>1.0.0</Version>
    <SupportedPlatforms>Linux, Solaris, MacOSX, BSD</SupportedPlatforms>
    <SoftwareType>Scientific</SoftwareType>
    <TestType>Processor</TestType>
    <License>Free</License>
    <Status>Verified</Status>
    <ExternalDependencies>build-essential</ExternalDependencies>
    <EnvironmentSize>1.0</EnvironmentSize>
    <ProjectURL>http://pritchardlab.stanford.edu/structure.html</ProjectURL>
    <Maintainer>Francisco Pina-Martins</Maintainer>
  </TestProfile>
</PhoronixTestSuite>